Factsheet for VIT_04s0008g03240.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 8
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g00990.t01	Wine grape	plasma membrane	36.3	35.96
VIT_01s0010g00330.t01	Wine grape	plasma membrane	35.47	34.72
VIT_00s1353g00010.t01	Wine grape	plasma membrane	36.19	34.41
VIT_18s0001g14610.t01	Wine grape	plasma membrane	34.33	33.88
VIT_18s0001g02590.t01	Wine grape	plastid	31.44	32.44
VIT_11s0149g00090.t01	Wine grape	plasma membrane	31.75	31.58
VIT_18s0001g15720.t01	Wine grape	plasma membrane	34.64	30.79
VIT_16s0013g01990.t01	Wine grape	nucleus, plasma membrane, vacuole	32.99	30.73
VIT_19s0027g00010.t01	Wine grape	plasma membrane	35.16	30.6
VIT_17s0000g08900.t01	Wine grape	plasma membrane	33.82	30.06
VIT_05s0051g00460.t01	Wine grape	plasma membrane	34.13	29.86
VIT_19s0015g01120.t01	Wine grape	plasma membrane	30.82	29.16
VIT_05s0051g00540.t01	Wine grape	plasma membrane	33.51	28.4
VIT_07s0005g05420.t01	Wine grape	plasma membrane	28.65	28.35
VIT_16s0098g01090.t01	Wine grape	plasma membrane, plastid	30.92	28.21
VIT_09s0018g01900.t01	Wine grape	plasma membrane	28.75	27.55
VIT_01s0010g00380.t01	Wine grape	plasma membrane	32.16	24.8
VIT_07s0005g04390.t01	Wine grape	plasma membrane	32.68	22.28

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100242450	wikigene:100242450	MapMan:18.4.1.11	Gene3D:3.30.200.20	Gene3D:3.80.10.10
ProteinID:CBI20837	ProteinID:CBI20837.3	UniProt:D7SU88	EMBL:FN595231	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611
InterPro:IPR032675	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100242450	wikigene:LOC100242450	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00069	PFAM:PF00560	PFAM:PF08263	PFAM:PF13855
PFscan:PS50011	PANTHER:PTHR27000	PANTHER:PTHR27000:SF87	InterPro:Prot_kinase_dom	SMART:SM00369	SUPFAM:SSF52047
SUPFAM:SSF52058	SUPFAM:SSF56112	TIGR:TC58624	TMHMM:TMhelix	UniParc:UPI00015C8658	ArrayExpress:VIT_04s0008g03240
EnsemblPlantsGene:VIT_04s0008g03240	EnsemblPlants:VIT_04s0008g03240.t01	unigene:Vvi.15120	RefSeq:XP_002281133	RefSeq:XP_002281133.1	RefSeq:XP_010648487.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:2682072..2685594

Molecular Weight (calculated)

106416.0 Da

IEP (calculated)

7.154

GRAVY (calculated)

-0.018

Length

967 amino acids

Sequence
(BLAST)

001: MAKRGAQTCG LFIISMFFFF FSFGMSAREE IELLLSFKAS INDPLGFLSN WNSSVDFCNW YGILCTNSSH VSSIDLSGKN ISGEISPVFF GLPYIETVNL
101: SNNALSGGIP GNISLCYSLR YLNLSNNNLT GSMPRGSASG LEALDLSNNV ISGEIPADMG LFSRLKVLDL GGNFLVGKIP NSIANITSLE FLTLASNQLV
201: GEIPRELGRM KSLKWIYLGY NNLSGGIPKE IGELTSLNHL DLVYNNLTGE IPSSLGNLSD LHFLFLYQNK LSGSIPPSIF DLKKLISLDL SDNSLSGEIP
301: ELVIQLQNLE ILHLFANDFT GKIPRALASL PRLQILQLWS NKLSGEIPKN LGKQNNLTVL DLSTNNLSGE IPESLCNSGR LFKLILFSNS LEGEVPKSLS
401: DCRSLRRVRL QSNHFSGELS SEFMKLPLVY FLDISDNNLT GKISDRRWDM PSLQMLSLAR NRFFGNLPQS FGASKLENLD LSENQFSGAV PSSFGNLSEL
501: MQLKLSENML SGDIPEELSS CKKLVSLNLS HNQLSGHIPA SFSDMPVLGQ LDLSQNQLSG KIPPNLGRVE SLVQVNLSNN HLHGSLPSTG AFLAINSSSV
601: SGNNLCGGDT TSGLPPCKRL KTPVWWFFVT CLLVVLVVLA LAAFAVVFIR RRDGSELKRV EHEDGMWEMQ FFDSKASKSI TIKGILSSTT ENNVISRGRK
701: GISYKGKTKN GEMQFVVKEI NDSNSIPSSF WTEFAQFGKL RHSNVVKLIG LCRSQKCGYL ISEYIEGKNL SEVLRSLSWE RRQKIAIGIS KALRFLHCNC
801: SPSMVVGNMS PQKIIIDGKD EPHLRLSPPL MVCTDFKCII SSAYFAPETR ETKDTTEKSD IYGFGLILIE LMTGKSPTDA EFGVHGSIVE WGRYCYSDCH
901: LDMWIDPIIR AQVSSNQNQM VEIMNLALHC TATDPTARPC ASDVLKTLES VLRSSSCVSG LKFSSPI

Best Arabidopsis Sequence Match ( AT2G25790.1 )
(BLAST)

001: MSTSHHHHHP PYLITTLFFL FLNFSCLHAN ELELLLSFKS SIQDPLKHLS SWSYSSTNDV CLWSGVVCNN ISRVVSLDLS GKNMSGQILT AATFRLPFLQ
101: TINLSNNNLS GPIPHDIFTT SSPSLRYLNL SNNNFSGSIP RGFLPNLYTL DLSNNMFTGE IYNDIGVFSN LRVLDLGGNV LTGHVPGYLG NLSRLEFLTL
201: ASNQLTGGVP VELGKMKNLK WIYLGYNNLS GEIPYQIGGL SSLNHLDLVY NNLSGPIPPS LGDLKKLEYM FLYQNKLSGQ IPPSIFSLQN LISLDFSDNS
301: LSGEIPELVA QMQSLEILHL FSNNLTGKIP EGVTSLPRLK VLQLWSNRFS GGIPANLGKH NNLTVLDLST NNLTGKLPDT LCDSGHLTKL ILFSNSLDSQ
401: IPPSLGMCQS LERVRLQNNG FSGKLPRGFT KLQLVNFLDL SNNNLQGNIN TWDMPQLEML DLSVNKFFGE LPDFSRSKRL KKLDLSRNKI SGVVPQGLMT
501: FPEIMDLDLS ENEITGVIPR ELSSCKNLVN LDLSHNNFTG EIPSSFAEFQ VLSDLDLSCN QLSGEIPKNL GNIESLVQVN ISHNLLHGSL PFTGAFLAIN
601: ATAVEGNIDL CSENSASGLR PCKVVRKRST KSWWLIITST FAAFLAVLVS GFFIVLVFQR THNVLEVKKV EQEDGTKWET QFFDSKFMKS FTVNTILSSL
701: KDQNVLVDKN GVHFVVKEVK KYDSLPEMIS DMRKLSDHKN ILKIVATCRS ETVAYLIHED VEGKRLSQVL SGLSWERRRK IMKGIVEALR FLHCRCSPAV
801: VAGNLSPENI VIDVTDEPRL CLGLPGLLCM DAAYMAPETR EHKEMTSKSD IYGFGILLLH LLTGKCSSSN EDIESGVNGS LVKWARYSYS NCHIDTWIDS
901: SIDTSVHQRE IVHVMNLALK CTAIDPQERP CTNNVLQALE STSSSSSSCT TYLSKILSLA

Arabidopsis Description

Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 [Source:UniProtKB/Swiss-Prot;Acc:O82318]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.