Factsheet for GSMUA_Achr9P24170_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P26680_001
GSMUA_Achr9P24170_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75820.1	GSMUA_Achr3P26680_001	AT1G75820.1	9294234
AT1G75820.1	GSMUA_Achr9P24170_001	AT1G75820.1	9294234

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G533800.1	Wheat	cytosol, plasma membrane, plastid	51.66	55.61
Os06t0717200-01	Rice	plasma membrane	66.38	54.43
Zm00001d014793_P001	Maize	plasma membrane	64.54	52.81
KXG20897	Sorghum	plasma membrane	64.42	52.5
Bra015812.1-P	Field mustard	cytosol	47.85	51.32
VIT_18s0001g14610.t01	Wine grape	plasma membrane	61.1	50.82
GSMUA_Achr4P14590_001	Banana	cytosol	44.54	50.7
HORVU0Hr1G022670.2	Barley	mitochondrion	64.54	49.16
AT1G75820.1	Thale cress	plasma membrane	58.4	48.57
GSMUA_Achr3P26680_001	Banana	extracellular, plasma membrane	36.32	48.45
Solyc04g081590.2.1	Tomato	plasma membrane	58.53	48.38
PGSC0003DMT400025747	Potato	plasma membrane	58.28	48.37
CDX73202	Canola	plasma membrane	58.4	48.23
GSMUA_Achr6P22870_001	Banana	plasma membrane	41.96	48.17
GSMUA_Achr4P03140_001	Banana	plasma membrane	44.91	47.97
CDX87661	Canola	plasma membrane	56.32	47.56
GSMUA_Achr4P32160_001	Banana	plasma membrane	43.56	47.4
GSMUA_Achr9P00190_001	Banana	plasma membrane	44.66	47.15
GSMUA_Achr7P27590_001	Banana	golgi, plasma membrane	35.83	47.1
KRH24413	Soybean	plasma membrane	56.93	47.01
GSMUA_Achr4P07370_001	Banana	plasma membrane	45.03	46.87
GSMUA_Achr5P16960_001	Banana	plasma membrane	44.05	46.87
TraesCS7D01G521200.1	Wheat	plasma membrane	63.07	46.47
KRH29397	Soybean	plasma membrane	55.58	46.18
GSMUA_Achr7P00790_001	Banana	plasma membrane	43.68	45.58
GSMUA_Achr5P02010_001	Banana	plasma membrane, vacuole	40.74	45.17
GSMUA_Achr3P16610_001	Banana	plasma membrane	42.33	45.04
GSMUA_Achr8P27460_001	Banana	plasma membrane	40.98	43.66
GSMUA_Achr6P07350_001	Banana	plasma membrane	35.71	42.54
GSMUA_Achr3P30640_001	Banana	plasma membrane	41.84	41.43
HORVU5Hr1G085130.1	Barley	endoplasmic reticulum, plasma membrane	22.45	40.94
GSMUA_Achr8P29350_001	Banana	plasma membrane	34.85	40.75
TraesCSU01G171600.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	22.09	40.0
KRH29398	Soybean	cytosol	30.18	38.92
GSMUA_Achr1P06510_001	Banana	cytosol	31.9	37.52
GSMUA_Achr11P...	Banana	plasma membrane	33.37	35.05
GSMUA_Achr4P04790_001	Banana	plasma membrane	33.99	33.05
GSMUA_Achr1P03380_001	Banana	plasma membrane	30.06	32.54
GSMUA_Achr2P04260_001	Banana	plasma membrane	30.55	31.64
GSMUA_Achr8P12880_001	Banana	plasma membrane	26.63	31.13
GSMUA_Achr10P...	Banana	plastid	28.47	30.93
GSMUA_Achr4P25040_001	Banana	plasma membrane	33.62	30.18
GSMUA_Achr4P28370_001	Banana	plasma membrane	32.39	30.0
GSMUA_Achr2P15820_001	Banana	plasma membrane	31.78	29.87
GSMUA_Achr8P12800_001	Banana	plasma membrane	30.18	27.95
GSMUA_Achr11P...	Banana	plasma membrane	24.42	27.49
GSMUA_Achr11P...	Banana	extracellular, plasma membrane, vacuole	26.87	27.41
GSMUA_Achr3P20720_001	Banana	plasma membrane	29.08	27.3
GSMUA_Achr3P10820_001	Banana	plasma membrane	27.12	25.91
GSMUA_Achr9P19720_001	Banana	plasma membrane	27.73	25.77
GSMUA_Achr10P...	Banana	plasma membrane	29.2	24.59
GSMUA_Achr7P23450_001	Banana	plasma membrane, vacuole	21.72	23.54

Protein Annotations

Gene3D:1.10.510.10	Gene3D:3.30.200.20	Gene3D:3.80.10.10	MapMan:50.2.7	ncoils:Coil	GO:GO:0000003
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010080	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0040007	GO:GO:0048833
EnsemblPlantsGene:GSMUA_Achr9G24170_001	EnsemblPlants:GSMUA_Achr9P24170_001	EnsemblPlants:GSMUA_Achr9T24170_001	InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675
InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M0U324
PFAM:PF07714	PFAM:PF08263	PFAM:PF13855	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27000
PANTHER:PTHR27000:SF231	InterPro:Prot_kinase_dom	SMART:SM00220	SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002956FFE	SEG:seg

Description

Receptor protein kinase CLAVATA1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G24170_001]

Coordinates

chr9:+:28990751..28994172

Molecular Weight (calculated)

87661.2 Da

IEP (calculated)

6.423

GRAVY (calculated)

0.077

Length

815 amino acids

Sequence
(BLAST)

001: MKAHLSLLVL FSVAFLFFLA TSDGDADLEA LIKLKAALVA PGSSALGNWD PASADYCSFT GVACDENSRV VALNFTGVQL NGTLPPEIGI LSGLVNLTVS
101: CSGVVGPLPM ELAALPSLRL LNVSNNNFSG AFPHVGPGGL RYLHLGGNYF NGTIPKEYSD IKNLEYLGLN GNALTGRVPA SLSRLSKLKE MYIGYYNMYV
201: GGIPPELGIL KHLDTLFLQI NRLSGSIPPE LGGLSMLESL DLSINELTGE VPESFAELKE LKLLSLFRNH IRGAIPPFVA ELPNLEVLEL WENNFTMQLP
301: ESLGRNGRLL KLDNGFFGPI PEKLGECKSL TRLGMLALSN NLITGSIPPA IGSLPALQNL ALDSNQISGA IPPEIGQLKQ LSKLNLSGNS LSGDIPVDLT
401: RCSSLVMIDL SRNNLTGAIP MQRMRSLTIF DLSYNRLAGV IPAQGQFLVF NESWFVGNPG LCGPPLHVRY PCGADGGGDG SSGEGHPRQR RWDAKRALPL
501: AGLAAAAGRL DFTVEDVMEC LKDDNVIGKG GAGIVYRGSM ACGTEVAIKR LVGRGAGAEH DRGFTAEVTT LGRIRHRNIV RLLGFVSNRE TNLLLYEYMP
601: GGSLGEMLHG SKGAHLGWEA RWRIAAEAAR GLCYLHHDCS PLILHRDVKS NNILLDSNFE AHVADFGLAK FLHHPGASEC VSSIAGSYGY IAPEYAYTLR
701: VDEKSDVYSF GVVLLELITG RRPVGGFGDG VDIVRWVRKT VLEAAETTDS AAILLIADKR LTSTPLDLIT NLFKVAMLCV EEQSTARPTM REVVHMLSNP
801: KSPPPPPPPT DLLSL

Best Arabidopsis Sequence Match ( AT1G75820.1 )
(BLAST)

001: MAMRLLKTHL LFLHLYLFFS PCFAYTDMEV LLNLKSSMIG PKGHGLHDWI HSSSPDAHCS FSGVSCDDDA RVISLNVSFT PLFGTISPEI GMLTHLVNLT
101: LAANNFTGEL PLEMKSLTSL KVLNISNNGN LTGTFPGEIL KAMVDLEVLD TYNNNFNGKL PPEMSELKKL KYLSFGGNFF SGEIPESYGD IQSLEYLGLN
201: GAGLSGKSPA FLSRLKNLRE MYIGYYNSYT GGVPPEFGGL TKLEILDMAS CTLTGEIPTS LSNLKHLHTL FLHINNLTGH IPPELSGLVS LKSLDLSINQ
301: LTGEIPQSFI NLGNITLINL FRNNLYGQIP EAIGELPKLE VFEVWENNFT LQLPANLGRN GNLIKLDVSD NHLTGLIPKD LCRGEKLEML ILSNNFFFGP
401: IPEELGKCKS LTKIRIVKNL LNGTVPAGLF NLPLVTIIEL TDNFFSGELP VTMSGDVLDQ IYLSNNWFSG EIPPAIGNFP NLQTLFLDRN RFRGNIPREI
501: FELKHLSRIN TSANNITGGI PDSISRCSTL ISVDLSRNRI NGEIPKGINN VKNLGTLNIS GNQLTGSIPT GIGNMTSLTT LDLSFNDLSG RVPLGGQFLV
601: FNETSFAGNT YLCLPHRVSC PTRPGQTSDH NHTALFSPSR IVITVIAAIT GLILISVAIR QMNKKKNQKS LAWKLTAFQK LDFKSEDVLE CLKEENIIGK
701: GGAGIVYRGS MPNNVDVAIK RLVGRGTGRS DHGFTAEIQT LGRIRHRHIV RLLGYVANKD TNLLLYEYMP NGSLGELLHG SKGGHLQWET RHRVAVEAAK
801: GLCYLHHDCS PLILHRDVKS NNILLDSDFE AHVADFGLAK FLVDGAASEC MSSIAGSYGY IAPEYAYTLK VDEKSDVYSF GVVLLELIAG KKPVGEFGEG
901: VDIVRWVRNT EEEITQPSDA AIVVAIVDPR LTGYPLTSVI HVFKIAMMCV EEEAAARPTM REVVHMLTNP PKSVANLIAF

Arabidopsis Description

CLV1Leucine-rich repeat receptor-like protein kinase (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0LGJ2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.