Factsheet for VIT_01s0146g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0146g00060.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24280.1	VIT_01s0146g00060.t01	AT1G24280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P16590_001	Banana	cytosol	75.38	82.74
Solyc05g015950.2.1	Tomato	plastid	81.2	81.48
PGSC0003DMT400028015	Potato	plastid	79.15	79.55
Bra030031.1-P	Field mustard	plastid	77.61	77.47
AT5G13110.1	Thale cress	plastid	78.8	77.35
CDY15726	Canola	plastid	77.61	77.34
CDY66858	Canola	plastid	77.09	76.96
CDY03902	Canola	plastid	77.61	76.82
Bra010958.1-P	Field mustard	plastid	76.92	76.79
Bra008855.1-P	Field mustard	plastid	78.12	76.42
EES10513	Sorghum	plastid	77.61	76.17
CDX69669	Canola	plastid	77.95	76.13
KRH01562	Soybean	endoplasmic reticulum, nucleus, plastid	78.12	76.04
Os07t0406300-02	Rice	plastid	76.24	75.85
GSMUA_Achr10P...	Banana	plastid	77.09	75.8
KRH70548	Soybean	nucleus, plastid	77.78	75.58
VIT_12s0057g00940.t01	Wine grape	plastid	74.02	74.14
AT1G24280.1	Thale cress	plastid	75.9	74.12
TraesCS2B01G080000.1	Wheat	plastid	74.87	73.61
CDX97227	Canola	endoplasmic reticulum	78.63	73.6
TraesCS2A01G067800.1	Wheat	mitochondrion	73.68	73.3
TraesCS2D01G066100.1	Wheat	plastid	73.68	72.8
CDX78507	Canola	endoplasmic reticulum	78.46	72.4
CDY68583	Canola	plastid	54.02	71.98
VIT_12s0057g01030.t01	Wine grape	plastid	68.38	68.38
HORVU2Hr1G010520.37	Barley	cytosol, plasma membrane	73.85	66.36
VIT_14s0060g00640.t01	Wine grape	plastid	44.79	41.46
VIT_14s0171g00490.t01	Wine grape	cytosol	36.24	41.09
Zm00001d017760_P001	Maize	cytosol	8.03	37.9
Zm00001d025288_P001	Maize	cytosol	7.69	37.82

Protein Annotations

KEGG:00030+1.1.1.49	KEGG:00480+1.1.1.49	EntrezGene:100267681	wikigene:100267681	Gene3D:3.30.360.10	Gene3D:3.40.50.720
MapMan:3.9.1.1	ProteinID:CBI38149	ProteinID:CBI38149.3	UniProt:D7U5Y0	EMBL:FN596513	InterPro:G6P_DH
InterPro:G6P_DH_AS	InterPro:G6P_DH_C	InterPro:G6P_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004345	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0006098	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0050661	GO:GO:0055114
EntrezGene:LOC100267681	wikigene:LOC100267681	HAMAP:MF_00966	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00479	PFAM:PF02781
PIRSF:PIRSF000110	PRINTS:PR00079	ScanProsite:PS00069	PANTHER:PTHR23429	PANTHER:PTHR23429:SF3	SUPFAM:SSF51735
SUPFAM:SSF55347	TIGR:TC54491	TIGR:TC71155	TIGRFAMs:TIGR00871	UniParc:UPI0001982A70	ArrayExpress:VIT_01s0146g00060
EnsemblPlantsGene:VIT_01s0146g00060	EnsemblPlants:VIT_01s0146g00060.t01	unigene:Vvi.14227	RefSeq:XP_002266930	RefSeq:XP_002266930.1	SEG:seg

Description

Glucose-6-phosphate 1-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:D7U5Y0]

Coordinates

chr1:+:21855923..21861593

Molecular Weight (calculated)

66121.6 Da

IEP (calculated)

7.582

GRAVY (calculated)

-0.379

Length

585 amino acids

Sequence
(BLAST)

001: MSTLSSSHCS ASYSSTSNAR RQRSTKLSSI PKRFVPVKSA RNSYQNVVLL QDGAVSSTMA PIENDSTLKK LKDGLLSATS SEECEDVVGF DGNDKNSTVS
101: ITVVGASGDL AKKKIFPALF ALFYEDCLPE HFTVFGYARS KMTDAELRNM VSKTLTCRID KRENCGEKME QFLKRCFYHS GQYDSEDNFT ELDKKLKEHE
201: AGRVSNRLFY LSIPPNIFID AVKCASLSAS SANGWTRVIV EKPFGRDSES SAALTNGLKQ YLAEDQIFRI DHYLGKELVE NLSVLRFSNL IFEPLWSRQY
301: IRNVQFIFSE DFGTEGRGGY FDNYGIIRDI MQNHLLQILA LFAMETPVSL DAEDIRNEKV KVLRSMRPLQ LEDVVIGQYK SHTKGGVTYP AYTDDKTVPK
401: DSLTPTFAAA ALFIDNARWD GVPFLMKAGK ALHTKGAEIR VQFRHVPGNL YNRNFGTDLD RATNELVIRV QPDEAIYLKI NNKVPGLGMR LDRSNLNLHY
501: AARYSKEIPD AYERLLLDAI EGERRLFIRS DELDAAWALF TPLLKELEEK KIIPEYYPHG SRGPVGAHYL AARYNVRWGD LSIEQ

Best Arabidopsis Sequence Match ( AT5G13110.1 )
(BLAST)

001: MAALSSSVTT RSYHSGYLAS FSPVNGDRHR SLSFLSASPQ GLNPLDLCVR FQRKSGRASV FMQDGAIVTN SNSSESKTSL KGLKDEVLSA LSQEAAKVGV
101: ESDGQSQSTV SITVVGASGD LAKKKIFPAL FALYYEGCLP EHFTIFGYSR SKMTDVELRN MVSKTLTCRI DKRANCGEKM EEFLKRCFYH SGQYDSQEHF
201: TELDKKLKEH EAGRISNRLF YLSIPPNIFV DAVKCASTSA SSVNGWTRVI VEKPFGRDSE TSAALTKSLK QYLEEDQIFR IDHYLGKELV ENLSVLRFSN
301: LIFEPLWSRQ YIRNVQFIFS EDFGTEGRGG YFDNYGIIRD IMQNHLLQIL ALFAMETPVS LDAEDIRNEK VKVLRSMRPI RVEDVVIGQY KSHTKGGVTY
401: PAYTDDKTVP KGSLTPTFAA AALFIDNARW DGVPFLMKAG KALHTRSAEI RVQFRHVPGN LYNRNTGSDL DQATNELVIR VQPDEAIYLK INNKVPGLGM
501: RLDRSNLNLL YSARYSKEIP DAYERLLLDA IEGERRLFIR SDELDAAWSL FTPLLKEIEE KKRIPEYYPY GSRGPVGAHY LAAKHKVQWG DVSIDQ

Arabidopsis Description

G6PD2Glucose-6-phosphate 1-dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FY99]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.