Factsheet for Solyc05g015950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g015950.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24280.1	Solyc05g015950.2.1	AT1G24280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028015	Potato	plastid	86.79	86.94
GSMUA_Achr6P16590_001	Banana	cytosol	74.27	81.24
VIT_01s0146g00060.t01	Wine grape	plastid	81.48	81.2
Bra030031.1-P	Field mustard	plastid	76.33	75.94
AT5G13110.1	Thale cress	plastid	77.53	75.84
Bra010958.1-P	Field mustard	plastid	76.16	75.77
CDY66858	Canola	plastid	75.99	75.6
CDY15726	Canola	plastid	75.99	75.47
CDY03902	Canola	plastid	75.81	74.79
CDX69669	Canola	plastid	76.67	74.62
Bra008855.1-P	Field mustard	plastid	76.16	74.25
GSMUA_Achr10P...	Banana	plastid	75.3	73.78
KRH01562	Soybean	endoplasmic reticulum, nucleus, plastid	75.64	73.38
KRH70548	Soybean	nucleus, plastid	75.47	73.09
EES10513	Sorghum	plastid	74.61	72.99
Os07t0406300-02	Rice	plastid	73.58	72.96
AT1G24280.1	Thale cress	plastid	74.79	72.79
TraesCS2A01G067800.1	Wheat	mitochondrion	72.38	71.77
TraesCS2B01G080000.1	Wheat	plastid	73.24	71.76
CDY68583	Canola	plastid	54.03	71.75
CDX97227	Canola	endoplasmic reticulum	76.5	71.36
Solyc07g045540.2.1	Tomato	plastid	70.5	71.23
CDX78507	Canola	endoplasmic reticulum	77.02	70.82
TraesCS2D01G066100.1	Wheat	plastid	71.53	70.44
HORVU2Hr1G010520.37	Barley	cytosol, plasma membrane	72.04	64.52
Solyc01g100950.2.1	Tomato	cytosol	20.58	52.4
Solyc02g093830.2.1	Tomato	plastid	36.19	41.29
Zm00001d017760_P001	Maize	cytosol	8.06	37.9
Zm00001d025288_P001	Maize	cytosol	7.55	36.97

Protein Annotations

KEGG:00030+1.1.1.49	KEGG:00480+1.1.1.49	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:3.9.1.1	InterPro:G6P_DH
InterPro:G6P_DH_AS	InterPro:G6P_DH_C	InterPro:G6P_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004345	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0006098	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0050661	GO:GO:0055114
UniProt:K4BYW1	HAMAP:MF_00966	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00479	PFAM:PF02781	PIRSF:PIRSF000110
PRINTS:PR00079	ScanProsite:PS00069	PANTHER:PTHR23429	PANTHER:PTHR23429:SF3	SUPFAM:SSF51735	SUPFAM:SSF55347
EnsemblPlantsGene:Solyc05g015950.2	EnsemblPlants:Solyc05g015950.2.1	TIGRFAMs:TIGR00871	UniParc:UPI0002766C7A	SEG:seg	:

Description

Glucose-6-phosphate 1-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4BYW1]

Coordinates

chr5:-:13085212..13089624

Molecular Weight (calculated)

66265.0 Da

IEP (calculated)

8.476

GRAVY (calculated)

-0.384

Length

583 amino acids

Sequence
(BLAST)

001: MVTLYSSPST NCSGLFSSYS NSSSIGFYNY HNNLPISSRN FASHKISLQI DAVRMQDGAV VAPPSKTQDE TPLKKLKDGI LSKEQKHIFD FDSNKDKSTV
101: SITVVGASGD LAKKKIFPAL FALYYEGCLP EHFTIFGYAR SKMTDDELRN MVSKTLTCRI DKRENCGEKM EQFLQRCFYH SGQYDSQENF AELDKKLKEH
201: EAGRFSNRLF YLSIPPNIFI NAVRCASLSA SSAHGWTRVI VEKPFGRDSE SSAALTGALK QYLKEDQIFR IDHYLGKELV ENLSVLRFSN LIFEPLWSRQ
301: YIRNVQFIFS EDFGTEGRGG YFDHYGIIRD IMQNHLLQIL ALFAMETPVS LDAEDIRNEK VKVLRSMRPL QLDDVIVGQY KSHTKGGVNY PGYTDDKTVP
401: KDSLTPTFAA AALFIDNARW DGVPFLMKAG KALHTRSAEI RVQFRHVPGN LYNKNFGSDL DQATNELVIR VQPDEAIYLK INNKVPGLGM RLDRSNLNLL
501: YSARYSKEIP DAYERLLLDA IEGERRLFIR SDELDAAWSL FTPVLKELEH KKIVPESYPY GSRGPIGAHY LAARYKVRWG DLA

Best Arabidopsis Sequence Match ( AT5G13110.1 )
(BLAST)

001: MAALSSSVTT RSYHSGYLAS FSPVNGDRHR SLSFLSASPQ GLNPLDLCVR FQRKSGRASV FMQDGAIVTN SNSSESKTSL KGLKDEVLSA LSQEAAKVGV
101: ESDGQSQSTV SITVVGASGD LAKKKIFPAL FALYYEGCLP EHFTIFGYSR SKMTDVELRN MVSKTLTCRI DKRANCGEKM EEFLKRCFYH SGQYDSQEHF
201: TELDKKLKEH EAGRISNRLF YLSIPPNIFV DAVKCASTSA SSVNGWTRVI VEKPFGRDSE TSAALTKSLK QYLEEDQIFR IDHYLGKELV ENLSVLRFSN
301: LIFEPLWSRQ YIRNVQFIFS EDFGTEGRGG YFDNYGIIRD IMQNHLLQIL ALFAMETPVS LDAEDIRNEK VKVLRSMRPI RVEDVVIGQY KSHTKGGVTY
401: PAYTDDKTVP KGSLTPTFAA AALFIDNARW DGVPFLMKAG KALHTRSAEI RVQFRHVPGN LYNRNTGSDL DQATNELVIR VQPDEAIYLK INNKVPGLGM
501: RLDRSNLNLL YSARYSKEIP DAYERLLLDA IEGERRLFIR SDELDAAWSL FTPLLKEIEE KKRIPEYYPY GSRGPVGAHY LAAKHKVQWG DVSIDQ

Arabidopsis Description

G6PD2Glucose-6-phosphate 1-dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FY99]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.