Factsheet for Solyc07g045540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044818	Potato	plastid	98.27	98.27
CDY72674	Canola	endoplasmic reticulum	57.37	85.53
KRH44236	Soybean	peroxisome	29.98	82.78
VIT_12s0057g00940.t01	Wine grape	plastid	76.6	75.68
KRH47181	Soybean	nucleus, plastid	75.22	73.81
Bra035525.1-P	Field mustard	plastid	72.27	73.16
CDY69162	Canola	plastid	72.27	73.16
CDY65677	Canola	plastid	72.1	73.11
KRH44244	Soybean	nucleus, plastid	74.35	72.96
AT5G35790.1	Thale cress	plastid	72.44	72.57
Solyc05g015950.2.1	Tomato	plastid	71.23	70.5
GSMUA_Achr8P05290_001	Banana	plastid	71.4	69.83
VIT_12s0057g01030.t01	Wine grape	plastid	70.36	69.4
Solyc01g100950.2.1	Tomato	cytosol	20.8	52.4
Solyc02g093830.2.1	Tomato	plastid	35.7	40.31

Protein Annotations

KEGG:00030+1.1.1.49	KEGG:00480+1.1.1.49	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:3.9.1.1	InterPro:G6P_DH
InterPro:G6P_DH_AS	InterPro:G6P_DH_C	InterPro:G6P_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004345	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0006006	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009051	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016491
GO:GO:0050661	GO:GO:0055114	UniProt:K4CEW0	HAMAP:MF_00966	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00479
PFAM:PF02781	PIRSF:PIRSF000110	PRINTS:PR00079	ScanProsite:PS00069	PANTHER:PTHR23429	PANTHER:PTHR23429:SF1
SUPFAM:SSF51735	SUPFAM:SSF55347	EnsemblPlantsGene:Solyc07g045540.2	EnsemblPlants:Solyc07g045540.2.1	TIGRFAMs:TIGR00871	UniParc:UPI000276AC16
SEG:seg	:	:	:	:	:

Description

Glucose-6-phosphate 1-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4CEW0]

Coordinates

chr7:+:58675919..58681483

Molecular Weight (calculated)

65764.7 Da

IEP (calculated)

7.311

GRAVY (calculated)

-0.339

Length

577 amino acids

Sequence
(BLAST)

001: MGMQLRLNPC SSSSAATSPS TLHNGAPYFC KKFNFLPFRT QPLNWVSGIY SRIQPRKHFE VFSSNGFPLN AVSVQDEQVP LTELGSGETT VSITVIGASG
101: DLAKKKIFPA LFALFYEDCL PENFVVFGYS RTKLSDEELR NMISTTLTCR IDKRENCDAK MEHFLERCFY HSGQYNSEDD FAELDYKLKE KEGCRISNRL
201: FYLSIPPNIF VDVVRCASLK ASSTSGWTRV IVEKPFGRDL ESSSELTRCL KKYLTEEQIF RIDHYLGKEL VENLSVLRFS NLVFEPLWSR NYIRNVQFIF
301: SEDFGTEGRG GYFDHYGIIR DIMQNHLLQI LALFAMETPV SLDAEDIRNE KVKVLRSMRP LQLEDIVLGQ YKGHSKGAKS YPAYTDDPTV PNGSITPTFS
401: AAALFIDNAR WDGVPFLMKA GKALHTKRAE IRVQFRHVPG NLYKRNFGAD MDKATNELVL RLQPDEAIYL KINNKVPGLG MRLDRSDLNL LYKAKYRGEI
501: PDAYERLLLD AIEGERRLFI RSDELDAAWA LFTPLLKELE EKKIAPELYP YGSRGPVGAH YLAAKHNVRW GDLSGDD

Best Arabidopsis Sequence Match ( AT5G35790.1 )
(BLAST)

001: MATHSMIIPS PSSSSSSLAT AASPFKETLP LFSRSLTFPR KSLFSQVRLR FFAEKHSQLD TSNGCATNFA SLQDSGDQLT EEHVTKGEST LSITVVGASG
101: DLAKKKIFPA LFALFYEGCL PQDFSVFGYA RTKLTHEELR DMISSTLTCR IDQREKCGDK MEQFLKRCFY HSGQYNSEED FAELNKKLKE KEAGKISNRL
201: YYLSIPPNIF VDVVRCASLR ASSENGWTRV IVEKPFGRDS ESSGELTRCL KQYLTEEQIF RIDHYLGKEL VENLSVLRFS NLVFEPLWSR NYIRNVQLIF
301: SEDFGTEGRG GYFDQYGIIR DIMQNHLLQI LALFAMETPV SLDAEDIRSE KVKVLRSMKP LRLEDVVVGQ YKGHNKGGKT YPGYTDDPTV PNHSLTPTFA
401: AAAMFINNAR WDGVPFLMKA GKALHTRGAE IRVQFRHVPG NLYKKSFATN LDNATNELVI RVQPDEGIYL RINNKVPGLG MRLDRSDLNL LYRSRYPREI
501: PDAYERLLLD AIEGERRLFI RSDELDAAWD LFTPALKELE EKKIIPELYP YGSRGPVGAH YLASKYNVRW GDLGEA

Arabidopsis Description

APG1Glucose-6-phosphate 1-dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q43727]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.