CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47181	Soybean	nucleus, plastid	96.77	96.77
KRH44236	Soybean	peroxisome	34.35	96.65
CDY72674	Canola	endoplasmic reticulum	55.95	85.01
VIT_12s0057g00940.t01	Wine grape	plastid	77.55	78.08
Bra035525.1-P	Field mustard	plastid	72.62	74.91
CDY69162	Canola	plastid	72.62	74.91
CDY65677	Canola	plastid	72.28	74.69
PGSC0003DMT400044818	Potato	plastid	73.13	74.52
AT5G35790.1	Thale cress	plastid	72.96	74.48
Solyc07g045540.2.1	Tomato	plastid	72.96	74.35
GSMUA_Achr8P05290_001	Banana	plastid	72.45	72.2
VIT_12s0057g01030.t01	Wine grape	plastid	69.56	69.91
KRH01562	Soybean	endoplasmic reticulum, nucleus, plastid	71.43	69.88
KRH70548	Soybean	nucleus, plastid	70.92	69.27
KRG96694	Soybean	plastid	46.09	44.87
KRH68414	Soybean	plastid	46.26	44.44
KRH07037	Soybean	endoplasmic reticulum	35.88	40.73
KRG94401	Soybean	cytosol, endoplasmic reticulum, mitochondrion	35.71	40.54
KRG94338	Soybean	cytosol, nucleus	34.35	38.92

Protein Annotations

KEGG:00030+1.1.1.49	KEGG:00480+1.1.1.49	EntrezGene:100780018	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:3.9.1.1
EMBL:ACUP02004923	InterPro:G6P_DH	InterPro:G6P_DH_AS	InterPro:G6P_DH_C	InterPro:G6P_DH_NAD-bd	EnsemblPlantsGene:GLYMA_08G199000
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004345	GO:GO:0005488	GO:GO:0005975
GO:GO:0006006	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0050661	GO:GO:0055114	UniProt:K7L7R7	EnsemblPlants:KRH44244	ProteinID:KRH44244
ProteinID:KRH44244.1	HAMAP:MF_00966	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00479	PFAM:PF02781	PIRSF:PIRSF000110
PRINTS:PR00079	ScanProsite:PS00069	PANTHER:PTHR23429	PANTHER:PTHR23429:SF1	MetaCyc:PWY-7268	SUPFAM:SSF51735
SUPFAM:SSF55347	TIGRFAMs:TIGR00871	UniParc:UPI0002337CE4	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:16077607..16082638

Molecular Weight (calculated)

66316.4 Da

IEP (calculated)

8.786

GRAVY (calculated)

-0.364

Length

588 amino acids

Sequence
(BLAST)

001: MASILCPSLT IVTSYASRNE PKLVCKLTAV TGNSHSPLWF SCTRPGNSAR NHFLLKSSNG LPLNAVSSND GLAGSSTAKE DGKPQPLEGP FPFPDSECTG
101: SNLSITVVGA SGDLAKKKIF PALFALFYED WLPKNFLVFG FARTKMTDEE LRNMISKTLT CRIDTRENCQ DKMDQFLKRC FYHSGQYNSE DHFSELGSKL
201: REKEGGKLSN RLFYLSIPPN IFVDVVRCAS LKASSKDGWT RVIVEKPFGR DSESSSELTK SLKQHLTEDQ IFRIDHYLGK ELVENLSVLR FSNLVFEPLW
301: SRNYIRNVQI IFSEDFGTEG RGGYFDHYGI IRHIMQNHLL QILALFAMET PVSLAAEDIR NEKVKVLRSM RPLELENVVV GQYKGHSKGG KSHPAYTDDP
401: TVPKGSLTPT FAAAALFIDN ARWDGVPFLM KAGKALHTKR AEIRVQFRHV PGNLYKRNFG TDLDKATNEL VLRVQPDEAI YLKINNKVPG LGMRLDRSDL
501: NLLFRARYPR EIPDAYERLL LDAIEGERRL FIRSDELDAA WALFTPLLKE IENKKIAPEL YPYGSRGPVG AHYLAARHNV RWGDLGED

Best Arabidopsis Sequence Match ( AT5G35790.1 )
(BLAST)

001: MATHSMIIPS PSSSSSSLAT AASPFKETLP LFSRSLTFPR KSLFSQVRLR FFAEKHSQLD TSNGCATNFA SLQDSGDQLT EEHVTKGEST LSITVVGASG
101: DLAKKKIFPA LFALFYEGCL PQDFSVFGYA RTKLTHEELR DMISSTLTCR IDQREKCGDK MEQFLKRCFY HSGQYNSEED FAELNKKLKE KEAGKISNRL
201: YYLSIPPNIF VDVVRCASLR ASSENGWTRV IVEKPFGRDS ESSGELTRCL KQYLTEEQIF RIDHYLGKEL VENLSVLRFS NLVFEPLWSR NYIRNVQLIF
301: SEDFGTEGRG GYFDQYGIIR DIMQNHLLQI LALFAMETPV SLDAEDIRSE KVKVLRSMKP LRLEDVVVGQ YKGHNKGGKT YPGYTDDPTV PNHSLTPTFA
401: AAAMFINNAR WDGVPFLMKA GKALHTRGAE IRVQFRHVPG NLYKKSFATN LDNATNELVI RVQPDEGIYL RINNKVPGLG MRLDRSDLNL LYRSRYPREI
501: PDAYERLLLD AIEGERRLFI RSDELDAAWD LFTPALKELE EKKIIPELYP YGSRGPVGAH YLASKYNVRW GDLGEA

Arabidopsis Description

APG1Glucose-6-phosphate 1-dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q43727]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.