CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01562
KRH70548

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24280.1	KRH01562	AT1G24280.1	21798944
AT1G24280.1	KRH70548	AT1G24280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01562	Soybean	endoplasmic reticulum, nucleus, plastid	94.68	94.84
GSMUA_Achr6P16590_001	Banana	cytosol	72.43	81.8
KRH44236	Soybean	peroxisome	27.91	80.38
VIT_01s0146g00060.t01	Wine grape	plastid	75.58	77.78
Bra008855.1-P	Field mustard	plastid	75.25	75.75
CDY66858	Canola	plastid	73.59	75.6
Bra030031.1-P	Field mustard	plastid	73.59	75.6
Bra010958.1-P	Field mustard	plastid	73.59	75.6
Solyc05g015950.2.1	Tomato	plastid	73.09	75.47
CDY15726	Canola	plastid	73.59	75.47
CDY03902	Canola	plastid	73.75	75.13
CDX69669	Canola	plastid	74.42	74.79
AT5G13110.1	Thale cress	plastid	73.75	74.5
Os07t0406300-02	Rice	plastid	72.59	74.32
PGSC0003DMT400028015	Potato	plastid	71.76	74.23
EES10513	Sorghum	plastid	73.26	73.99
AT1G24280.1	Thale cress	plastid	73.59	73.96
TraesCS2A01G067800.1	Wheat	mitochondrion	71.93	73.64
GSMUA_Achr10P...	Banana	plastid	72.76	73.61
TraesCS2B01G080000.1	Wheat	plastid	71.76	72.61
TraesCS2D01G066100.1	Wheat	plastid	70.93	72.13
CDX97227	Canola	endoplasmic reticulum	74.75	72.0
KRH47181	Soybean	nucleus, plastid	69.77	71.43
CDY68583	Canola	plastid	51.99	71.3
KRH44244	Soybean	nucleus, plastid	69.27	70.92
CDX78507	Canola	endoplasmic reticulum	73.75	70.03
HORVU2Hr1G010520.37	Barley	cytosol, plasma membrane	71.1	65.75
KRG96694	Soybean	plastid	44.02	43.87
KRH68414	Soybean	plastid	43.69	42.97
KRG94401	Soybean	cytosol, endoplasmic reticulum, mitochondrion	35.05	40.73
KRH07037	Soybean	endoplasmic reticulum	34.88	40.54
KRG94338	Soybean	cytosol, nucleus	34.22	39.69
Zm00001d017760_P001	Maize	cytosol	7.97	38.71
Zm00001d025288_P001	Maize	cytosol	7.14	36.13

Protein Annotations

KEGG:00030+1.1.1.49	KEGG:00480+1.1.1.49	EntrezGene:100793694	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:3.9.1.1
EMBL:ACUP02000782	InterPro:G6P_DH	InterPro:G6P_DH_AS	InterPro:G6P_DH_C	InterPro:G6P_DH_NAD-bd	EnsemblPlantsGene:GLYMA_02G096800
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004345	GO:GO:0005488	GO:GO:0005975
GO:GO:0006006	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0050661	GO:GO:0055114	UniProt:I1JDT9	EnsemblPlants:KRH70548	ProteinID:KRH70548
ProteinID:KRH70548.1	HAMAP:MF_00966	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00479	PFAM:PF02781	PRINTS:PR00079
ScanProsite:PS00069	PANTHER:PTHR23429	PANTHER:PTHR23429:SF3	MetaCyc:PWY-7268	SUPFAM:SSF51735	SUPFAM:SSF55347
TIGRFAMs:TIGR00871	UniParc:UPI0002337542	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:8700742..8705334

Molecular Weight (calculated)

68184.1 Da

IEP (calculated)

8.305

GRAVY (calculated)

-0.420

Length

602 amino acids

Sequence
(BLAST)

001: MATALYSTHC RSLATSSSSS SLQPSPLSSN LAYLQRLTFS QRFLPSKVSL KSQPQTYQIP VLTQQQEGTV AAAVTPVENG TSHKQLKPDL LSVKSPEESR
101: AEDGFEKDEN ESSVSITVVG ASGDLAKKKI FPALFALYYE DCLPKHFTIY GYARSKMTDA ELRNMVSKTL TCRIDKRENC NEKMDQFLKR CFYHSGQYDS
201: QENFAALDKK LKEHEGGRTS NRLFYLSIPP NIFIDAVKCA SLSASSGNGW TRVIVEKPFG RDSDSSAALT RSLKQYLTED QIFRIDHYLG KELVENLSVL
301: RFSNLIFEPL WSRQYIRNVQ LIFSEDFGTE GRGGYFDHYG IIRDIMQNHL LQILALFAME TPVSLDAEDI RNEKVKVLRS MRPLRLDDMV IGQYKSHTRG
401: GVTYPAYVDD KTVPSGSLTP TFAAAALFID NARWDGVPFL MKAGKALHNK RAEIRVQFRH VPGNLYNRNF GTDLDRATNE LVIRVQPDEA IYLKINNKVP
501: GLGMKLDRSN LNLHYAARYS KEIPDAYERL LLDAIEGERR LFIRSDELDA AWSLFTPVLK ELEEKKIIPE YYPYGSRGPV GAHYLAARHN VRWGDLGTDV
601: DQ

Best Arabidopsis Sequence Match ( AT5G13110.1 )
(BLAST)

001: MAALSSSVTT RSYHSGYLAS FSPVNGDRHR SLSFLSASPQ GLNPLDLCVR FQRKSGRASV FMQDGAIVTN SNSSESKTSL KGLKDEVLSA LSQEAAKVGV
101: ESDGQSQSTV SITVVGASGD LAKKKIFPAL FALYYEGCLP EHFTIFGYSR SKMTDVELRN MVSKTLTCRI DKRANCGEKM EEFLKRCFYH SGQYDSQEHF
201: TELDKKLKEH EAGRISNRLF YLSIPPNIFV DAVKCASTSA SSVNGWTRVI VEKPFGRDSE TSAALTKSLK QYLEEDQIFR IDHYLGKELV ENLSVLRFSN
301: LIFEPLWSRQ YIRNVQFIFS EDFGTEGRGG YFDNYGIIRD IMQNHLLQIL ALFAMETPVS LDAEDIRNEK VKVLRSMRPI RVEDVVIGQY KSHTKGGVTY
401: PAYTDDKTVP KGSLTPTFAA AALFIDNARW DGVPFLMKAG KALHTRSAEI RVQFRHVPGN LYNRNTGSDL DQATNELVIR VQPDEAIYLK INNKVPGLGM
501: RLDRSNLNLL YSARYSKEIP DAYERLLLDA IEGERRLFIR SDELDAAWSL FTPLLKEIEE KKRIPEYYPY GSRGPVGAHY LAAKHKVQWG DVSIDQ

Arabidopsis Description

G6PD2Glucose-6-phosphate 1-dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FY99]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.