CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07037	Soybean	endoplasmic reticulum	97.3	97.3
KRG94338	Soybean	cytosol, nucleus	84.94	84.78
VIT_14s0171g00490.t01	Wine grape	cytosol	83.01	83.33
Bra028474.1-P	Field mustard	cytosol	81.85	82.49
AT5G40760.1	Thale cress	cytosol	81.66	82.14
CDX67476	Canola	cytosol	82.24	81.3
Solyc02g093830.2.1	Tomato	plastid	80.12	81.21
PGSC0003DMT400052250	Potato	cytosol	79.92	81.02
CDY00159	Canola	cytosol	80.12	79.35
CDY11711	Canola	cytosol	81.27	79.14
CDY20053	Canola	cytosol	78.57	79.03
GSMUA_Achr8P28750_001	Banana	cytosol	78.57	78.27
CDX83677	Canola	cytosol	78.57	78.12
Os04t0485300-01	Rice	cytosol, mitochondrion, plastid	76.06	78.02
Bra025264.1-P	Field mustard	cytosol	66.41	77.65
TraesCS2B01G362700.1	Wheat	cytosol, unclear	75.87	77.21
TraesCS2A01G320400.1	Wheat	cytosol, golgi	75.87	77.21
HORVU2Hr1G083940.2	Barley	cytosol	75.68	77.01
CDY13701	Canola	cytosol	78.57	76.79
KXG26589	Sorghum	cytosol	74.9	76.53
Zm00001d003252_P003	Maize	cytosol	74.71	76.33
Bra039084.1-P	Field mustard	cytosol	76.64	76.2
Os02t0600400-01	Rice	golgi, plasma membrane	75.48	75.63
KXG30566	Sorghum	plastid	74.52	74.52
Zm00001d017119_P003	Maize	peroxisome	74.13	74.27
TraesCS6B01G243100.2	Wheat	peroxisome	73.75	73.89
TraesCS6D01G195700.1	Wheat	peroxisome	73.75	73.89
TraesCS6A01G211600.1	Wheat	peroxisome	73.55	73.69
GSMUA_Achr9P07730_001	Banana	cytosol	74.32	71.56
AT3G27300.4	Thale cress	endoplasmic reticulum	77.22	68.14
GSMUA_Achr6P28350_001	Banana	cytosol	78.38	65.48
KRH44236	Soybean	peroxisome	19.11	47.37
KRH47181	Soybean	nucleus, plastid	41.12	36.22
KRH44244	Soybean	nucleus, plastid	40.54	35.71
KRH01562	Soybean	endoplasmic reticulum, nucleus, plastid	40.73	35.11
KRH70548	Soybean	nucleus, plastid	40.73	35.05
KRG96694	Soybean	plastid	32.82	28.15
KRH68414	Soybean	plastid	33.2	28.1

Protein Annotations

KEGG:00030+1.1.1.49	KEGG:00480+1.1.1.49	EntrezGene:100817852	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:3.9.1.1
EMBL:ACUP02011951	UniProt:F8SMC3	InterPro:G6P_DH	InterPro:G6P_DH_AS	InterPro:G6P_DH_C	InterPro:G6P_DH_NAD-bd
EnsemblPlantsGene:GLYMA_19G082300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004345	GO:GO:0005488
GO:GO:0005975	GO:GO:0006006	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0050661	GO:GO:0055114	EMBL:HQ651809	EnsemblPlants:KRG94401
ProteinID:KRG94401	ProteinID:KRG94401.1	ProteinID:KRG94402.1	ProteinID:KRG94403.1	HAMAP:MF_00966	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00479	PFAM:PF02781	PIRSF:PIRSF000110	PRINTS:PR00079	ScanProsite:PS00069	PANTHER:PTHR23429
PANTHER:PTHR23429:SF6	MetaCyc:PWY-7268	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR00871	UniParc:UPI0001849EBD

Description

hypothetical protein

Coordinates

chr19:-:29812735..29821281

Molecular Weight (calculated)

59333.4 Da

IEP (calculated)

6.748

GRAVY (calculated)

-0.392

Length

518 amino acids

Sequence
(BLAST)

001: MGTSEWHIER RSSFGTESPL AREAGNVPET GSLSIVVLGA SGDLAKKKTF PALFHLYRQG FLPADEVHIF GYARTKISDD ELRNRLRGYL VPNKGASPQL
101: LEDVEKFLQL IKYVSGSYDS EDGFRLLDKE ISEHEYLKKS VEGLSRRLFY LALPPSVYPS VCKMIKTCCM NKSDLGGWTR VVVEKPFGKD LESAEELSTE
201: IGKLFEEPQI YRIDHYLGKE LVQNLLVLRF ANRFFLPLWN RDNIDNVQIV FREDFGTDGR GGYFDQYGII RDIIQNHLLQ VLCLVAMEKP VSLRPEHIRD
301: EKVKVLESVL PIRDDEVVLG QYEGYKDDPT VPDKSNTPTF ATVILRIHNE RWEGVPFILK AGKALNSRKA EIRVQFKDVP GDIFKCKKQG RNEFVIRLQP
401: LEAMYMKLTV KQPGLEMSTV QSELDLSYGQ RYQGVTIPEA YERLILDTIK GDQQHFVRRD ELKASWQIFT PLLHRIDEGE FKPLPYKPGS RGPAEADQLL
501: EKAGYVQTHG YIWIPPTL

Best Arabidopsis Sequence Match ( AT5G40760.1 )
(BLAST)

001: MGSGQWHVEK RSTFRNDSFV REYGIVPETG CLSIIVLGAS GDLAKKKTFP ALFNLYRQGF LNPDEVHIFG YARTKISDEE LRDRIRGYLV DEKNAEQAEA
101: LSKFLQLIKY VSGPYDAEEG FQRLDKAISE HEISKNSTEG SSRRLFYLAL PPSVYPSVCK MIKTCCMNKS DLGGWTRIVV EKPFGKDLES AEQLSSQIGE
201: LFDESQIYRI DHYLGKELVQ NMLVLRFANR FFLPLWNRDN IENVQIVFRE DFGTEGRGGY FDEYGIIRDI IQNHLLQVLC LVAMEKPISL KPEHIRDEKV
301: KVLQSVVPIS DDEVVLGQYE GYRDDDTVPN DSNTPTFATT ILRIHNERWE GVPFILKAGK ALNSRKAEIR IQFKDVPGDI FRCQKQGRNE FVIRLQPSEA
401: MYMKLTVKQP GLDMNTVQSE LDLSYGQRYQ GVAIPEAYER LILDTIKGDQ QHFVRRDELK VAWEIFTPLL HRIDKGEVKS IPYKPGSRGP KEADQLLEKA
501: GYLQTHGYIW IPPTL

Arabidopsis Description

ACG12Glucose-6-phosphate 1-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UA94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.