CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, nucleus

Predictor Summary:

plastid 11
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01562
KRH70548

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24280.1	KRH01562	AT1G24280.1	21798944
AT1G24280.1	KRH70548	AT1G24280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70548	Soybean	nucleus, plastid	94.84	94.68
GSMUA_Achr6P16590_001	Banana	cytosol	72.88	82.18
KRH44236	Soybean	peroxisome	28.45	81.82
VIT_01s0146g00060.t01	Wine grape	plastid	76.04	78.12
Bra030031.1-P	Field mustard	plastid	74.04	75.94
CDY66858	Canola	plastid	73.88	75.77
Bra010958.1-P	Field mustard	plastid	73.88	75.77
Bra008855.1-P	Field mustard	plastid	75.37	75.75
Solyc05g015950.2.1	Tomato	plastid	73.38	75.64
CDY15726	Canola	plastid	73.88	75.64
CDY03902	Canola	plastid	74.21	75.47
CDX69669	Canola	plastid	74.38	74.62
PGSC0003DMT400028015	Potato	plastid	72.21	74.57
AT5G13110.1	Thale cress	plastid	73.88	74.5
EES10513	Sorghum	plastid	73.71	74.33
AT1G24280.1	Thale cress	plastid	73.71	73.96
TraesCS2A01G067800.1	Wheat	mitochondrion	72.21	73.81
Os07t0406300-02	Rice	plastid	72.21	73.81
GSMUA_Achr10P...	Banana	plastid	72.71	73.45
TraesCS2B01G080000.1	Wheat	plastid	72.55	73.28
TraesCS2D01G066100.1	Wheat	plastid	71.38	72.47
KRH47181	Soybean	nucleus, plastid	70.38	71.94
CDX97227	Canola	endoplasmic reticulum	74.71	71.84
CDY68583	Canola	plastid	52.25	71.53
KRH44244	Soybean	nucleus, plastid	69.88	71.43
CDX78507	Canola	endoplasmic reticulum	74.04	70.19
HORVU2Hr1G010520.37	Barley	cytosol, plasma membrane	71.21	65.75
KRG96694	Soybean	plastid	44.09	43.87
KRH68414	Soybean	plastid	43.76	42.97
KRG94401	Soybean	cytosol, endoplasmic reticulum, mitochondrion	35.11	40.73
KRH07037	Soybean	endoplasmic reticulum	35.11	40.73
KRG94338	Soybean	cytosol, nucleus	34.28	39.69
Zm00001d017760_P001	Maize	cytosol	7.99	38.71
Zm00001d025288_P001	Maize	cytosol	7.15	36.13

Protein Annotations

KEGG:00030+1.1.1.49	KEGG:00480+1.1.1.49	EntrezGene:100815891	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:3.9.1.1
EMBL:ACUP02011521	InterPro:G6P_DH	InterPro:G6P_DH_AS	InterPro:G6P_DH_C	InterPro:G6P_DH_NAD-bd	EnsemblPlantsGene:GLYMA_18G284600
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004345	GO:GO:0005488	GO:GO:0005975
GO:GO:0006006	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0050661	GO:GO:0055114	UniProt:I1N508	EnsemblPlants:KRH01562	ProteinID:KRH01562
ProteinID:KRH01562.1	HAMAP:MF_00966	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00479	PFAM:PF02781	PRINTS:PR00079
ScanProsite:PS00069	PANTHER:PTHR23429	PANTHER:PTHR23429:SF3	MetaCyc:PWY-7268	SUPFAM:SSF51735	SUPFAM:SSF55347
TIGRFAMs:TIGR00871	UniParc:UPI000233EFC2	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:56530019..56533698

Molecular Weight (calculated)

67948.8 Da

IEP (calculated)

7.856

GRAVY (calculated)

-0.406

Length

601 amino acids

Sequence
(BLAST)

001: MATTLYSTPC RSLATSSSSS SSLQPCPLSS NLAYPQRVTF SQRFLASKVS LKSQPQPYQI PVHTQQPEGT VTAAVTPVEN GTSHKQLKAD LLSLKSPDES
101: EDGFEKDENE SSVSITVVGA SGDLAKKKIF PALFALYYED CLPKHFTIYG YARSKMTDAE LRNMVSKTLT CRIDKRENCN EKMDQFLIRC FYHSGQYDSQ
201: ENFAALDKKL KEHEGGRTSN RLFYLSIPPN IFIDAVKCAS LSASSGNGWT RVIVEKPFGR DSESSAALTK SLKQYLTEDQ IFRIDHYLGK ELVENLSVLR
301: FSNLIFEPLW SRQYIRNVQL IFSEDFGTEG RGGYFDHYGI IRDIMQNHLL QILALFAMET PVSLDAEDIR NEKVKVLRSM RPLRLEDVVI GQYKSHTRGG
401: VTYPAYVDDK TVPSGSLTPT FAAAALFIDN ARWDGVPFLM KAGKALHNKR AEIRVQFRHV PGNLYNRNFG TDLDRATNEL VIRVQPDEAI YLKINNKVPG
501: LGMKLDRSNL NLHYAARYSK EIPDAYERLL LDAIEGERRL FIRSDELDAA WSLFTPVLKE LEEKKIIPEY YPYGSRGPVG AHYLAARHNV RWGDLGTDVD
601: H

Best Arabidopsis Sequence Match ( AT5G13110.1 )
(BLAST)

001: MAALSSSVTT RSYHSGYLAS FSPVNGDRHR SLSFLSASPQ GLNPLDLCVR FQRKSGRASV FMQDGAIVTN SNSSESKTSL KGLKDEVLSA LSQEAAKVGV
101: ESDGQSQSTV SITVVGASGD LAKKKIFPAL FALYYEGCLP EHFTIFGYSR SKMTDVELRN MVSKTLTCRI DKRANCGEKM EEFLKRCFYH SGQYDSQEHF
201: TELDKKLKEH EAGRISNRLF YLSIPPNIFV DAVKCASTSA SSVNGWTRVI VEKPFGRDSE TSAALTKSLK QYLEEDQIFR IDHYLGKELV ENLSVLRFSN
301: LIFEPLWSRQ YIRNVQFIFS EDFGTEGRGG YFDNYGIIRD IMQNHLLQIL ALFAMETPVS LDAEDIRNEK VKVLRSMRPI RVEDVVIGQY KSHTKGGVTY
401: PAYTDDKTVP KGSLTPTFAA AALFIDNARW DGVPFLMKAG KALHTRSAEI RVQFRHVPGN LYNRNTGSDL DQATNELVIR VQPDEAIYLK INNKVPGLGM
501: RLDRSNLNLL YSARYSKEIP DAYERLLLDA IEGERRLFIR SDELDAAWSL FTPLLKEIEE KKRIPEYYPY GSRGPVGAHY LAAKHKVQWG DVSIDQ

Arabidopsis Description

G6PD2Glucose-6-phosphate 1-dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FY99]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.