CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07037	Soybean	endoplasmic reticulum	84.78	84.94
KRG94401	Soybean	cytosol, endoplasmic reticulum, mitochondrion	84.78	84.94
Bra028474.1-P	Field mustard	cytosol	81.12	81.91
AT5G40760.1	Thale cress	cytosol	80.92	81.55
CDX67476	Canola	cytosol	81.31	80.53
VIT_14s0171g00490.t01	Wine grape	cytosol	79.96	80.43
Solyc02g093830.2.1	Tomato	plastid	78.23	79.45
PGSC0003DMT400052250	Potato	cytosol	78.03	79.26
CDY11711	Canola	cytosol	81.12	79.14
CDY00159	Canola	cytosol	79.58	78.97
CDY20053	Canola	cytosol	78.03	78.64
CDX83677	Canola	cytosol	78.42	78.12
Os04t0485300-01	Rice	cytosol, mitochondrion, plastid	74.95	77.03
CDY13701	Canola	cytosol	78.42	76.79
Bra025264.1-P	Field mustard	cytosol	65.32	76.52
Bra039084.1-P	Field mustard	cytosol	76.3	76.01
TraesCS2B01G362700.1	Wheat	cytosol, unclear	73.8	75.25
TraesCS2A01G320400.1	Wheat	cytosol, golgi	73.8	75.25
GSMUA_Achr8P28750_001	Banana	cytosol	75.34	75.19
HORVU2Hr1G083940.2	Barley	cytosol	73.6	75.05
Zm00001d003252_P003	Maize	cytosol	73.22	74.95
KXG26589	Sorghum	cytosol	73.22	74.95
Os02t0600400-01	Rice	golgi, plasma membrane	74.57	74.85
KXG30566	Sorghum	plastid	74.37	74.52
Zm00001d017119_P003	Maize	peroxisome	73.6	73.89
TraesCS6A01G211600.1	Wheat	peroxisome	72.06	72.34
TraesCS6B01G243100.2	Wheat	peroxisome	72.06	72.34
TraesCS6D01G195700.1	Wheat	peroxisome	71.87	72.15
GSMUA_Achr9P07730_001	Banana	cytosol	72.06	69.52
AT3G27300.4	Thale cress	endoplasmic reticulum	78.61	69.51
GSMUA_Achr6P28350_001	Banana	cytosol	75.72	63.39
KRH44236	Soybean	peroxisome	18.3	45.45
KRH47181	Soybean	nucleus, plastid	39.5	34.86
KRH44244	Soybean	nucleus, plastid	38.92	34.35
KRH01562	Soybean	endoplasmic reticulum, nucleus, plastid	39.69	34.28
KRH70548	Soybean	nucleus, plastid	39.69	34.22
KRG96694	Soybean	plastid	32.56	27.98
KRH68414	Soybean	plastid	32.56	27.61

Protein Annotations

KEGG:00030+1.1.1.49	KEGG:00480+1.1.1.49	EntrezGene:100806107	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:3.9.1.1
EMBL:ACUP02011935	InterPro:G6P_DH	InterPro:G6P_DH_AS	InterPro:G6P_DH_C	InterPro:G6P_DH_NAD-bd	EnsemblPlantsGene:GLYMA_19G077300
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004345	GO:GO:0005488	GO:GO:0005975
GO:GO:0006006	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0050661	GO:GO:0055114	UniProt:I1N7G1	ProteinID:KRG94337.1	EnsemblPlants:KRG94338
ProteinID:KRG94338	ProteinID:KRG94338.1	HAMAP:MF_00966	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00479	PFAM:PF02781
PIRSF:PIRSF000110	PRINTS:PR00079	ScanProsite:PS00069	PANTHER:PTHR23429	PANTHER:PTHR23429:SF6	MetaCyc:PWY-7268
SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR00871	UniParc:UPI000233F2E1	:	:

Description

hypothetical protein

Coordinates

chr19:-:27787327..27796726

Molecular Weight (calculated)

59733.6 Da

IEP (calculated)

6.742

GRAVY (calculated)

-0.450

Length

519 amino acids

Sequence
(BLAST)

001: MTSSEWRVER RQSSTNESPL SRDLEHATET GSLSIVVLGA SGDLAKKKTF PALFNLYRQG FLLPDEVCIF GYARSKLTDD ELRNRLHGYL VPSKDFSPEQ
101: LEEVSKFLHL IKYVSGSYDS EDSFCNLDKE ISEHELLKNS TEGSSRRLFY LALPPSVYPS VCKMIKTCCM NKSDLGGWTR IVVEKPFGKD LESAEQLSTQ
201: IGQLFEEPQI YRIDHYLGKE LVQNMLVLRF ANRLFMPLWN RDNIANVQIV FRENFGTEGR GGYFDQYGII RDIIQNHLLQ VFCLVAMEKP VSLKPEHIRD
301: EKLKVLESVL PIKDDEVVLG QYEGYKDDPT VPDNSNTPTF ATVILRVHNE RWEGVPFILK AGKALNSRKA DIRVQFKDVP GDIFKCQKQG RNEFVIRLQP
401: SEAMYMKLTV KKPGLEMETV QSELDLSYRQ RYQAVTIPEA YERLILDSIR GDQQHFVRRD ELKASWEIFT PLLHRIDKGE FKSTPYQPGT RGPVEADKLL
501: LEKAGYVQTH GYRWIPPTL

Best Arabidopsis Sequence Match ( AT3G27300.5 )
(BLAST)

001: MRLELLENVI ISQVIFDFMI NQSINRNTMI PISLNFNFTG LFCILVRVLK NYWKMGSGQW HMEKRSTLKN DSFVKEYNPV TETGSLSIIV LGASGDLAKK
101: KTFPALFNLF HQGFLNPDEV HIFGYARSKI TDEELRDKIR GYLVDEKNAS KKTEALSKFL KLIKYVSGPY DSEEGFKRLD KAILEHEISK KTAEGSSRRL
201: FYLALPPSVY PPVSKMIKAW CTNKSDLGGW TRIVVEKPFG KDLESAEQLS SQIGALFEEP QIYRIDHYLG KELVQNMLVL RFANRLFLPL WNRDNIANVQ
301: IVFREDFGTE GRGGYFDEYG IIRDIIQNHL LQVLCLVAME KPISLKPEHI RDEKVKVLQS VIPIKDEEVV LGQYEGYRDD PTVPNDSNTP TFATTILRIN
401: NERWEGVPFI LKAGKAMSSK KADIRIQFKD VPGDIFKCQN QGRNEFVIRL QPSEAMYMKL TVKQPGLEMQ TVQSELDLSY KQRYQDVSIP EAYERLILDT
501: IRGDQQHFVR RDELKAAWEI FTPLLHRIDK GEVKSVPYKQ GSRGPAEADQ LLKKAGYMQT HGYIWIPPTL

Arabidopsis Description

G6PD5Glucose-6-phosphate 1-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.