Factsheet for PGSC0003DMT400052250

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093830.2.1	Tomato	plastid	92.37	92.37
VIT_14s0171g00490.t01	Wine grape	cytosol	84.34	83.53
AT5G40760.1	Thale cress	cytosol	83.17	82.52
Bra028474.1-P	Field mustard	cytosol	82.78	82.3
CDX67476	Canola	cytosol	82.39	80.34
KRH07037	Soybean	endoplasmic reticulum	81.21	80.12
GSMUA_Achr8P28750_001	Banana	cytosol	81.41	80.0
KRG94401	Soybean	cytosol, endoplasmic reticulum, mitochondrion	81.02	79.92
CDY11711	Canola	cytosol	82.19	78.95
CDX83677	Canola	cytosol	80.04	78.5
CDY20053	Canola	cytosol	78.67	78.06
KRG94338	Soybean	cytosol, nucleus	79.26	78.03
CDY00159	Canola	cytosol	79.84	78.01
Os04t0485300-01	Rice	cytosol, mitochondrion, plastid	76.71	77.62
Bra025264.1-P	Field mustard	cytosol	66.73	76.98
TraesCS2B01G362700.1	Wheat	cytosol, unclear	76.52	76.82
HORVU2Hr1G083940.2	Barley	cytosol	76.52	76.82
TraesCS2A01G320400.1	Wheat	cytosol, golgi	76.52	76.82
Zm00001d003252_P003	Maize	cytosol	76.13	76.73
KXG26589	Sorghum	cytosol	76.13	76.73
Os02t0600400-01	Rice	golgi, plasma membrane	77.1	76.21
CDY13701	Canola	cytosol	78.86	76.04
Bra039084.1-P	Field mustard	cytosol	76.71	75.24
KXG30566	Sorghum	plastid	75.73	74.71
TraesCS6A01G211600.1	Wheat	peroxisome	75.54	74.66
Zm00001d017119_P003	Maize	peroxisome	75.54	74.66
TraesCS6D01G195700.1	Wheat	peroxisome	75.34	74.47
GSMUA_Achr9P07730_001	Banana	cytosol	78.08	74.16
TraesCS6B01G243100.2	Wheat	peroxisome	74.95	74.08
AT3G27300.4	Thale cress	endoplasmic reticulum	79.26	68.99
GSMUA_Achr6P28350_001	Banana	cytosol	81.41	67.1
PGSC0003DMT400044818	Potato	plastid	40.31	35.7
PGSC0003DMT400028015	Potato	plastid	40.51	35.57
PGSC0003DMT400007105	Potato	plastid	32.09	27.52

Protein Annotations

KEGG:00030+1.1.1.49	KEGG:00480+1.1.1.49	EntrezGene:102595038	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:3.9.1.1
ProteinID:ABB55386	ProteinID:ABB55386.1	ProteinID:CAA52442	ProteinID:CAA52442.1	EMBL:DQ252509	InterPro:G6P_DH
InterPro:G6P_DH_AS	InterPro:G6P_DH_C	InterPro:G6P_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004345	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0006006	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0050661	GO:GO:0055114	UniProt:M1BT30	HAMAP:MF_00966
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00479	PFAM:PF02781	EnsemblPlantsGene:PGSC0003DMG400020269	PGSC:PGSC0003DMG400020269	EnsemblPlants:PGSC0003DMT400052250
PIRSF:PIRSF000110	PRINTS:PR00079	ScanProsite:PS00069	PANTHER:PTHR23429	PANTHER:PTHR23429:SF6	SUPFAM:SSF51735
SUPFAM:SSF55347	TIGRFAMs:TIGR00871	UniParc:UPI000294906C	EMBL:X74421	RefSeq:XP_006338664.1	RefSeq:XP_006338665.1
RefSeq:XP_006338666.1	RefSeq:XP_006338667.1	RefSeq:XP_006338668.1	:	:	:

Description

Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform [Source:PGSC_GENE;Acc:PGSC0003DMG400020269]

Coordinates

chr2:+:47730406..47737016

Molecular Weight (calculated)

58485.8 Da

IEP (calculated)

6.273

GRAVY (calculated)

-0.433

Length

511 amino acids

Sequence
(BLAST)

001: MAASWCIEKR GSIRNDSFRD NDNIPETGCL SIIVLGASGD LAKKKTFPAL FNLYRQGFLQ SNEVHIFGYA RTKISDDDLR SRIRGYLSQG KENEGEVSEF
101: LQLIKYVSGS YDSAEGFTSL DKAISEHEFS KNSTEGSSRR LFYFALPPSV YPSVCRMIKS YCMNKSDLGG WTRIVVEKPF GKDLASSEQL SSQIGELFDE
201: PQIYRIDHYL GKELVQNLLV LRFANRFFLP LWNRDNIDNI QIVFREDFGT EGRGGYFDEY GIIRDIIQNH LLQVLCLVAM EKPVSQKPEH IRDEKVKVLQ
301: SMLPIEDEEV VLGQYEGYKD DPTVPNNSNT PTFATMVLRI HNERWEGVPF IMKAGKALNS RKAEIRVQFK DVPGDIFRCQ KQGRNEFVIR LQPSEAMYMK
401: LTVKKPGLEM STVQSELDLS YGQRYQGVVI PEAYERLILD TIRGDQQHFV RRDELKAAWE IFTPLLHRID NGEVKPIPYK PGSRGPAEAD ELLQNAGYVQ
501: THGYIWIPPT L

Best Arabidopsis Sequence Match ( AT5G40760.1 )
(BLAST)

001: MGSGQWHVEK RSTFRNDSFV REYGIVPETG CLSIIVLGAS GDLAKKKTFP ALFNLYRQGF LNPDEVHIFG YARTKISDEE LRDRIRGYLV DEKNAEQAEA
101: LSKFLQLIKY VSGPYDAEEG FQRLDKAISE HEISKNSTEG SSRRLFYLAL PPSVYPSVCK MIKTCCMNKS DLGGWTRIVV EKPFGKDLES AEQLSSQIGE
201: LFDESQIYRI DHYLGKELVQ NMLVLRFANR FFLPLWNRDN IENVQIVFRE DFGTEGRGGY FDEYGIIRDI IQNHLLQVLC LVAMEKPISL KPEHIRDEKV
301: KVLQSVVPIS DDEVVLGQYE GYRDDDTVPN DSNTPTFATT ILRIHNERWE GVPFILKAGK ALNSRKAEIR IQFKDVPGDI FRCQKQGRNE FVIRLQPSEA
401: MYMKLTVKQP GLDMNTVQSE LDLSYGQRYQ GVAIPEAYER LILDTIKGDQ QHFVRRDELK VAWEIFTPLL HRIDKGEVKS IPYKPGSRGP KEADQLLEKA
501: GYLQTHGYIW IPPTL

Arabidopsis Description

ACG12Glucose-6-phosphate 1-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UA94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.