CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94401	Soybean	cytosol, endoplasmic reticulum, mitochondrion	97.3	97.3
KRG94338	Soybean	cytosol, nucleus	84.94	84.78
VIT_14s0171g00490.t01	Wine grape	cytosol	82.82	83.14
Bra028474.1-P	Field mustard	cytosol	81.08	81.71
Solyc02g093830.2.1	Tomato	plastid	80.5	81.6
AT5G40760.1	Thale cress	cytosol	81.08	81.55
PGSC0003DMT400052250	Potato	cytosol	80.12	81.21
CDX67476	Canola	cytosol	81.27	80.34
CDY00159	Canola	cytosol	79.15	78.39
CDY11711	Canola	cytosol	80.5	78.38
GSMUA_Achr8P28750_001	Banana	cytosol	78.57	78.27
Os04t0485300-01	Rice	cytosol, mitochondrion, plastid	76.25	78.22
CDY20053	Canola	cytosol	77.61	78.06
TraesCS2A01G320400.1	Wheat	cytosol, golgi	76.25	77.6
TraesCS2B01G362700.1	Wheat	cytosol, unclear	76.25	77.6
HORVU2Hr1G083940.2	Barley	cytosol	76.06	77.41
CDX83677	Canola	cytosol	77.8	77.35
Bra025264.1-P	Field mustard	cytosol	65.64	76.75
KXG26589	Sorghum	cytosol	75.1	76.73
Zm00001d003252_P003	Maize	cytosol	74.9	76.53
Os02t0600400-01	Rice	golgi, plasma membrane	75.87	76.02
CDY13701	Canola	cytosol	77.61	75.85
Bra039084.1-P	Field mustard	cytosol	75.68	75.24
KXG30566	Sorghum	plastid	74.9	74.9
TraesCS6B01G243100.2	Wheat	peroxisome	74.52	74.66
TraesCS6D01G195700.1	Wheat	peroxisome	74.52	74.66
Zm00001d017119_P003	Maize	peroxisome	74.52	74.66
TraesCS6A01G211600.1	Wheat	peroxisome	74.32	74.47
GSMUA_Achr9P07730_001	Banana	cytosol	74.71	71.93
AT3G27300.4	Thale cress	endoplasmic reticulum	77.03	67.97
GSMUA_Achr6P28350_001	Banana	cytosol	78.76	65.81
KRH44236	Soybean	peroxisome	19.11	47.37
KRH47181	Soybean	nucleus, plastid	41.31	36.39
KRH44244	Soybean	nucleus, plastid	40.73	35.88
KRH01562	Soybean	endoplasmic reticulum, nucleus, plastid	40.73	35.11
KRH70548	Soybean	nucleus, plastid	40.54	34.88
KRG96694	Soybean	plastid	33.01	28.31
KRH68414	Soybean	plastid	33.2	28.1

Protein Annotations

KEGG:00030+1.1.1.49	KEGG:00480+1.1.1.49	EntrezGene:100793462	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:3.9.1.1
UniProt:A0A0R0FM59	EMBL:ACUP02009919	InterPro:G6P_DH	InterPro:G6P_DH_AS	InterPro:G6P_DH_C	InterPro:G6P_DH_NAD-bd
EnsemblPlantsGene:GLYMA_16G063200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004345	GO:GO:0005488
GO:GO:0005975	GO:GO:0006006	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0050661	GO:GO:0055114	ProteinID:KRH07035.1	ProteinID:KRH07036.1
EnsemblPlants:KRH07037	ProteinID:KRH07037	ProteinID:KRH07037.1	ProteinID:KRH07038.1	HAMAP:MF_00966	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00479	PFAM:PF02781	PIRSF:PIRSF000110	PRINTS:PR00079	ScanProsite:PS00069	PANTHER:PTHR23429
PANTHER:PTHR23429:SF6	MetaCyc:PWY-7268	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR00871	UniParc:UPI0001CAC022

Description

hypothetical protein

Coordinates

chr16:+:6210137..6217815

Molecular Weight (calculated)

59274.1 Da

IEP (calculated)

6.022

GRAVY (calculated)

-0.406

Length

518 amino acids

Sequence
(BLAST)

001: METSEWHIER RSSFGSESPL AREAGNVPET GSLSIVVLGA SGDLAKKKTF PALFHLYLQG FLPPDEVHIF GYARTKISDD ELRNRLRGYL VPKKGASPQQ
101: LEDVEKFLQL IKYVSGSYDS EDGFRLLDKE ISEHEYLKNS VEGLSRRLFY LALPPSVYPS VCKMIKTCCM NKSDLGGWTR VVVEKPFGKD LESAEELSTE
201: IGKLFEEPQI YRIDHYLGKE LVQNLLVLRF ANRFFLPLWN RDNIDNVQIV FREDFGTDGR GGYFDQYGII RDIIQNHLLQ VLCLVAMEKP VSLRPEHIRD
301: EKVKVLESVL PINDDEVVLG QYEGYKDDPT VPDESNTPTF ATVVLRIHNE RWEGVPFILK AGKALNSRKA EIRVQFKDVP GDIFKCKKQG RNECVIRLQP
401: SEAIYMKLTV KQPGLEMSTV QSELDLSYGQ RYQGVTIPEA YERLILDTIR GDQQHFVRRD ELKASWQIFT PLLHRIDEGE FKPLPYKPGS RGPAEADQLL
501: EKAGYVQTHG YIWIPPTL

Best Arabidopsis Sequence Match ( AT5G40760.1 )
(BLAST)

001: MGSGQWHVEK RSTFRNDSFV REYGIVPETG CLSIIVLGAS GDLAKKKTFP ALFNLYRQGF LNPDEVHIFG YARTKISDEE LRDRIRGYLV DEKNAEQAEA
101: LSKFLQLIKY VSGPYDAEEG FQRLDKAISE HEISKNSTEG SSRRLFYLAL PPSVYPSVCK MIKTCCMNKS DLGGWTRIVV EKPFGKDLES AEQLSSQIGE
201: LFDESQIYRI DHYLGKELVQ NMLVLRFANR FFLPLWNRDN IENVQIVFRE DFGTEGRGGY FDEYGIIRDI IQNHLLQVLC LVAMEKPISL KPEHIRDEKV
301: KVLQSVVPIS DDEVVLGQYE GYRDDDTVPN DSNTPTFATT ILRIHNERWE GVPFILKAGK ALNSRKAEIR IQFKDVPGDI FRCQKQGRNE FVIRLQPSEA
401: MYMKLTVKQP GLDMNTVQSE LDLSYGQRYQ GVAIPEAYER LILDTIKGDQ QHFVRRDELK VAWEIFTPLL HRIDKGEVKS IPYKPGSRGP KEADQLLEKA
501: GYLQTHGYIW IPPTL

Arabidopsis Description

ACG12Glucose-6-phosphate 1-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UA94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.