CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G055380.1	Barley	cytosol	32.64	88.68
CDX80598	Canola	plastid	89.03	88.41
KRH55202	Soybean	cytosol	27.64	86.15
Bra009924.1-P	Field mustard	mitochondrion, plastid	82.78	64.29
CDY66499	Canola	plastid	81.11	63.34
CDX99569	Canola	plastid	21.25	62.7
CDY05546	Canola	plastid	79.58	61.95
AT5G26860.1	Thale cress	cytosol, plastid	79.17	57.87
VIT_14s0060g01230.t01	Wine grape	mitochondrion, plastid	73.61	54.19
CDY22819	Canola	mitochondrion	50.42	53.54
TraesCS2D01G094000.1	Wheat	mitochondrion, plastid	70.69	51.89
TraesCS2B01G110800.1	Wheat	mitochondrion, plastid	70.69	51.89
TraesCS2A01G095500.1	Wheat	plastid	70.69	51.89
HORVU2Hr1G016000.1	Barley	plastid	70.56	51.78
EER97776	Sorghum	plastid	70.83	51.52
CDY33341	Canola	plastid	14.44	51.49
CDY66234	Canola	plastid	13.75	50.51
CDY18823	Canola	plastid	61.94	48.9
KXG39532	Sorghum	mitochondrion	65.56	46.09
CDY25199	Canola	mitochondrion	51.67	45.81
CDY22818	Canola	plastid	50.97	43.38
CDY25198	Canola	cytosol, mitochondrion	24.31	39.86
CDY22821	Canola	mitochondrion	52.92	38.96
Os03t0306400-01	Rice	plasma membrane	3.89	38.36
CDY18802	Canola	cytosol	24.03	34.95
Os07t0689300-01	Rice	mitochondrion	18.47	28.18
CDY25202	Canola	cytosol	37.78	24.16
CDX77732	Canola	mitochondrion, peroxisome	28.89	23.45
CDY33510	Canola	mitochondrion, peroxisome	28.75	23.34
CDX87027	Canola	mitochondrion	4.44	19.16
CDX80228	Canola	endoplasmic reticulum, extracellular, mitochondrion, nucleus	4.58	13.81
CDY18803	Canola	cytosol	2.22	11.19
CDY68112	Canola	cytosol	0.56	4.82
CDY25200	Canola	cytosol	0.56	4.82
CDY22820	Canola	cytosol	0.56	4.82
CDX88248	Canola	cytosol	0.28	2.63
CDX80599	Canola	cytosol	0.28	2.6

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.1480	MapMan:19.4.2.4	Gene3D:2.30.130.40	Gene3D:3.40.50.300	GO:A0A078DH13
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	EnsemblPlants:CDX88247	ProteinID:CDX88247	ProteinID:CDX88247.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004176	GO:GO:0004252	GO:GO:0005488
GO:GO:0005524	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016787
GO:GO:0019538	GO:GO:0030163	EnsemblPlantsGene:GSBRNA2T00147732001	InterPro:IPR003111	InterPro:Lon_Prtase	InterPro:Lon_bac/euk-typ
InterPro:Lon_substr-bd	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02190	PIRSF:PIRSF001174	PFscan:PS51787
PANTHER:PTHR43718	PANTHER:PTHR43718:SF2	InterPro:PUA-like_sf	SMART:SM00382	SMART:SM00464	SUPFAM:SSF52540
SUPFAM:SSF88697	TIGRFAMs:TIGR00763	UniParc:UPI0004EE1A01	SEG:seg	:	:

Description

BnaA06g28380D

Coordinates

chrLK031854:+:1642909..1647896

Molecular Weight (calculated)

80030.3 Da

IEP (calculated)

6.666

GRAVY (calculated)

-0.271

Length

720 amino acids

Sequence
(BLAST)

001: MKGFDTNLRL QASPQLSNVF LPKKLSVTNL NFRSSSSSSP AMLKLFSSRV HHLTPAIRPG PRAVESPLFK ALSQLTGLNR RSSSLGHRVA EAEAEVADSK
101: SSSAIVSTNP RPEDCLTVLA LPVPHRPLFP GFYMPIYVKD PKVLAALQES RRRQAPYAGA FLLKDAPSTD SSSSTETEKN INELKGKDLL ERLHEVGTLA
201: QISSIQGDQV ILVGHRRLRI TEMVSEEPLT VKVDHLKDKP FDMDDDVIKA TSFEVISTLR DVLKTSSLWR DHVQTYTQHI GDFTYPRLAD FGAAICGANR
301: HQTQEVLEEL DVHKRLRLTL ELMKKEMEIS KIQETIAKAI EDKISGEQRR YLLNEQLKAI KKELGVETDD KSALSGKFKE RIEPNIPAHI LQVIEEELTK
401: LQLLEASSSE FNVTRNYLDW LTILPWGNYS DENFDVVRAQ QILDEDHYGL SDVKERILEF IAVGRLRGTS QGKIICLSGP PGVGKTSIGR SIARALNRKF
501: FRFSVGGLGD VAEIKGHRRT YVGAMPGKMV QCLKSVGTAN PLVLIDEIDK LGKGHAGDPA SALLELLDPE QNANFLDHYL DVTIDLSKVL FVCTANVIDM
601: IPNPLLDRME VISIAGYITD EKVHIARDYL EKNARGDCGI KPEQVDVSDA ALLSLIENYC REAGVRNLQK QIEKIYRKIA LKLVREGAVP AEPAVTTDVE
701: EAEIVAKLDR ISSSPLQDAP

Best Arabidopsis Sequence Match ( AT5G26860.1 )
(BLAST)

001: MKGFDTNLRL QASSPEFSNG FLPKRQNFIK LNRRNCYPRS SFSPTMLKLF TSSASRVHHL TPVSRVVGSS PVESPLFKAL SQITGWNRRS TSLGHRAFFC
101: SEPTNGEAAA EAETKAVESD SEVSDSKSSS AIVPTNPRPE DCLTVLALPV PHRPLFPGFY MPIYVKDPKV LAALQESRRR QAPYAGAFLL KDDPSADSSS
201: STDAEKNINE LKGKELLNRL HEVGTLAQIS SIQGDQVILV GHRRLRIKEM VSEEPLTVKV DHLKDNPFDM DDDVVKATSF EVISTLRDVL KTSSLWRDHV
301: QTYTQHIGDF TYPRLADFGA AICGANRHQA QEVLEELDVH KRLRLTLELM KKEMEISKIQ ETIAKAIEEK ISGEQRRYLL NEQLKAIKKE LGVETDDKSA
401: LSAKFKERIE PNKEKIPAHV LQVIEEELTK LQLLEASSSE FNVTRNYLDW LTILPWGNYS NENFDVARAQ TILDEDHYGL SDVKERILEF IAVGRLRGTS
501: QGKIICLSGP PGVGKTSIGR SIARALNRKF FRFSVGGLAD VAEIKGHRRT YVGAMPGKMV QCLKSVGTAN PLVLIDEIDK LGRGHAGDPA SALLELLDPE
601: QNANFLDHYL DVTIDLSKVL FVCTANVIDM IPNPLLDRME VISIAGYITD EKVHIARDYL EKTARGDCGV KPEQVEVSDA ALLSLIENYC REAGVRNLQK
701: QIEKIYRKIA LKLVREGAVP EEPAVASDPE EAEIVADVGE SIENHTVEEN TVSSAEEPKE EAQTEKIAIE TVMIDESNLA DYVGKPVFHA EKLYEQTPVG
801: VVMGLAWTSM GGSTLYIETT VVEEGEGKGG LNITGQLGDV MKESAQIAHT VARKIMLEKE PENQFFANSK LHLHVPAGAT PKDGPSAGCT MITSLLSLAT
901: KKPVRKDLAM TGEVTLTGRI LPIGGVKEKT IAARRSQIKT IIFPEANRRD FDELAENVKE GLNVHFVDDY GKIFELAFGY DKQED

Arabidopsis Description

LON_ARA_ARAlon protease 1 [Source:TAIR;Acc:AT5G26860]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.