CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68112	Canola	cytosol	98.8	98.8
CDY25200	Canola	cytosol	98.8	98.8
CDX88248	Canola	cytosol	75.9	82.89
CDX80599	Canola	cytosol	75.9	81.82
CDY18803	Canola	cytosol	62.65	36.36
CDY25198	Canola	cytosol, mitochondrion	96.39	18.22
CDY18802	Canola	cytosol	84.34	14.14
Os07t0689300-01	Rice	mitochondrion	71.08	12.5
CDY22818	Canola	plastid	91.57	8.98
CDY22821	Canola	mitochondrion	98.8	8.38
CDY18823	Canola	plastid	89.16	8.11
AT3G05790.1	Thale cress	plastid	87.95	7.75
CDY66499	Canola	plastid	81.93	7.38
CDY05546	Canola	plastid	81.93	7.35
CDY25202	Canola	cytosol	98.8	7.28
VIT_14s0060g01230.t01	Wine grape	mitochondrion, plastid	72.29	6.13
TraesCS2D01G094000.1	Wheat	mitochondrion, plastid	69.88	5.91
HORVU2Hr1G016000.1	Barley	plastid	69.88	5.91
KXG39532	Sorghum	mitochondrion	72.29	5.86
EER97776	Sorghum	plastid	69.88	5.86
TraesCS2B01G110800.1	Wheat	mitochondrion, plastid	68.67	5.81
TraesCS2A01G095500.1	Wheat	plastid	68.67	5.81
Os03t0306400-01	Rice	plasma membrane	3.61	4.11
CDX77732	Canola	mitochondrion, peroxisome	39.76	3.72
CDY33510	Canola	mitochondrion, peroxisome	39.76	3.72
CDY25199	Canola	mitochondrion	15.66	1.6
CDY22819	Canola	mitochondrion	10.84	1.33
CDX80228	Canola	endoplasmic reticulum, extracellular, mitochondrion, nucleus	3.61	1.26
CDX88247	Canola	plastid	4.82	0.56
CDX80598	Canola	plastid	4.82	0.55
HORVU1Hr1G055380.1	Barley	cytosol	0.0	0.0
KRH55202	Soybean	cytosol	0.0	0.0
CDX87027	Canola	mitochondrion	0.0	0.0
CDY66234	Canola	plastid	0.0	0.0
CDY33341	Canola	plastid	0.0	0.0
CDX99569	Canola	plastid	0.0	0.0

Protein Annotations

Gene3D:3.30.230.10	MapMan:35.1	GO:A0A078G8Q0	UniProt:A0A078G8Q0	EnsemblPlants:CDY22820	ProteinID:CDY22820
ProteinID:CDY22820.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004176	GO:GO:0004252
GO:GO:0005488	GO:GO:0005524	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	EnsemblPlantsGene:GSBRNA2T00021166001	InterPro:IPR008269	InterPro:IPR014721
InterPro:Lon_Prtase	InterPro:Lon_proteolytic	PFAM:PF05362	PRINTS:PR00830	PFscan:PS51786	PANTHER:PTHR43718
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SUPFAM:SSF54211	UniParc:UPI0004EEF872	:	:

Description

BnaA06g02570DBnaA06g02570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8Q0]

Coordinates

chrLK032136:+:334437..334771

Molecular Weight (calculated)

9496.5 Da

IEP (calculated)

5.744

GRAVY (calculated)

-0.375

Length

83 amino acids

Sequence
(BLAST)

1: MKKPVRKDLA MTGEVTLTGR ILPIGGLKEK TMAARRSQVK VIIFPEANRR DFEGLEESVK EGLDVHFVDE YEQIFELAFG YDH

Best Arabidopsis Sequence Match ( AT3G05790.2 )
(BLAST)

001: MLKFLTPTAY ASHHVTPATR FRSTPVKNLL FKQLTLLTGW NRSSYELGRR SFSSDLDSDT KSSTTTVSAK PHLDDCLTVI ALPLPHKPLI PGFYMPIYVK
101: DPKVLAALQE SRRQQAPYAG AFLLKDDASS DSSSSSETEN ILEKLKGKEL INRIHEVGTL AQISSIQGEQ VILIGHRQLR ITEMVSESED PLTVKVDHLK
201: DKPYDKDDDV IKATYFQVMS TLRDVLKTTS LWRDHVRTYT QHIGEFNYPK LADFGAGISG ANKHQNQGVL EELDVHKRLE LTLELVKKEV EINKIQESIA
301: KAVEEKFSGD RRRIILKEQI NAIKKELGGE TDSKSALSEK FRGRIDPIKD KIPGHVLKVI EEELKKLQLL ETSSSEFDVT CNYLDWLTVL PWGNFSDENF
401: NVLRAEKILD EDHYGLSDVK ERILEFIAVG GLRGTSQGKI ICLSGPTGVG KTSIGRSIAR ALDRKFFRFS VGGLSDVAEI KGHRRTYIGA MPGKMVQCLK
501: NVGTENPLVL IDEIDKLGVR GHHGDPASAM LELLDPEQNA NFLDHYLDVP IDLSKVLFVC TANVTDTIPG PLLDRMEVIT LSGYITDEKM HIARDYLEKT
601: ARRDCGIKPE QVDVSDAAFL SLIEHYCREA GVRNLQKQIE KIFRKIALKL VRKAASTEVP RISDDVTTDT EETKSLAKTD LESPETSAEG STVLTDELAT
701: GDPTESTTEQ SGEVAETVEK YMIDESNLSD YVGKPVFQEE KIYEQTPVGV VMGLAWTSMG GSTLYIETTF VEEGEGKGGL HITGRLGDVM KESAEIAHTV
801: ARRIMLEKEP ENKLFANSKL HLHVPAGATP KDGPSAGCTM ITSLLSLALK KPVRKDLAMT GEVTLTGRIL AIGGVKEKTI AARRSQVKVI IFPEANRRDF
901: DELARNVKEG LEVHFVDEYE QIFELAFGYD H

Arabidopsis Description

LON4Lon protease homolog 4, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M9L7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.