CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99569	Canola	plastid	94.06	77.87
CDY66234	Canola	plastid	70.79	72.96
Solyc10g024300.1.1	Tomato	cytosol	38.61	33.62
CDX88247	Canola	plastid	51.49	14.44
CDX80598	Canola	plastid	50.99	14.21
CDY05546	Canola	plastid	55.94	12.22
CDY66499	Canola	plastid	52.48	11.5
CDY22819	Canola	mitochondrion	33.17	9.88
TraesCS2A01G095500.1	Wheat	plastid	44.55	9.17
EER97776	Sorghum	plastid	44.55	9.09
TraesCS2D01G094000.1	Wheat	mitochondrion, plastid	44.06	9.07
HORVU2Hr1G016000.1	Barley	plastid	44.06	9.07
TraesCS2B01G110800.1	Wheat	mitochondrion, plastid	44.06	9.07
CDY25199	Canola	mitochondrion	35.64	8.87
CDY18823	Canola	plastid	37.62	8.33
KXG39532	Sorghum	mitochondrion	39.6	7.81
CDY22821	Canola	mitochondrion	36.14	7.46
CDY22818	Canola	plastid	30.2	7.21
CDY33510	Canola	mitochondrion, peroxisome	12.87	2.93
CDX80228	Canola	endoplasmic reticulum, extracellular, mitochondrion, nucleus	3.47	2.93
CDY18803	Canola	cytosol	1.98	2.8
CDX77732	Canola	mitochondrion, peroxisome	11.88	2.71
CDY25202	Canola	cytosol	11.88	2.13
CDX87027	Canola	mitochondrion	0.99	1.2
CDY25198	Canola	cytosol, mitochondrion	1.49	0.68
CDY25200	Canola	cytosol	0.0	0.0
CDY68112	Canola	cytosol	0.0	0.0
CDY22820	Canola	cytosol	0.0	0.0
HORVU1Hr1G055380.1	Barley	cytosol	0.0	0.0
CDY18802	Canola	cytosol	0.0	0.0
Os03t0306400-01	Rice	plasma membrane	0.0	0.0
Os07t0689300-01	Rice	mitochondrion	0.0	0.0
CDX88248	Canola	cytosol	0.0	0.0
CDX80599	Canola	cytosol	0.0	0.0
Zm00001d043949_P001	Maize	cytosol, plastid	0.0	0.0

Protein Annotations

MapMan:35.1	GO:A0A078H644	UniProt:A0A078H644	EnsemblPlants:CDY33341	ProteinID:CDY33341	ProteinID:CDY33341.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004176	GO:GO:0004252	GO:GO:0005488
GO:GO:0005524	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016787
GO:GO:0019538	GO:GO:0030163	EnsemblPlantsGene:GSBRNA2T00054179001	InterPro:IPR003111	InterPro:Lon_Prtase	InterPro:Lon_substr-bd
PFAM:PF02190	PANTHER:PTHR43718	PANTHER:PTHR43718:SF2	UniParc:UPI0004EE225D	SEG:seg	:

Description

BnaC05g12420DBnaC05g12420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H644]

Coordinates

chrLK032312:-:159303..160905

Molecular Weight (calculated)

23176.2 Da

IEP (calculated)

10.707

GRAVY (calculated)

-0.586

Length

202 amino acids

Sequence
(BLAST)

001: MASPPTCLVF HLKRMIKTHH NRRLSRSSRR LVRWFSSSPT YDDSISPHGV SSSGGRCLQF GDQLLDLSKH MLHRQLKQLD SNEESSLSSS ADMEKNINDL
101: KGKDLLKRLH EVGTLAQISS IQGDQVILVG HRRLRITEKV SEEPLTVKVD HLKDKPFDMD DDVIKATSFE VISTLRDVHK RLRLTLELMK KKKGKLARFR
201: KL

Best Arabidopsis Sequence Match ( AT5G26860.1 )
(BLAST)

001: MKGFDTNLRL QASSPEFSNG FLPKRQNFIK LNRRNCYPRS SFSPTMLKLF TSSASRVHHL TPVSRVVGSS PVESPLFKAL SQITGWNRRS TSLGHRAFFC
101: SEPTNGEAAA EAETKAVESD SEVSDSKSSS AIVPTNPRPE DCLTVLALPV PHRPLFPGFY MPIYVKDPKV LAALQESRRR QAPYAGAFLL KDDPSADSSS
201: STDAEKNINE LKGKELLNRL HEVGTLAQIS SIQGDQVILV GHRRLRIKEM VSEEPLTVKV DHLKDNPFDM DDDVVKATSF EVISTLRDVL KTSSLWRDHV
301: QTYTQHIGDF TYPRLADFGA AICGANRHQA QEVLEELDVH KRLRLTLELM KKEMEISKIQ ETIAKAIEEK ISGEQRRYLL NEQLKAIKKE LGVETDDKSA
401: LSAKFKERIE PNKEKIPAHV LQVIEEELTK LQLLEASSSE FNVTRNYLDW LTILPWGNYS NENFDVARAQ TILDEDHYGL SDVKERILEF IAVGRLRGTS
501: QGKIICLSGP PGVGKTSIGR SIARALNRKF FRFSVGGLAD VAEIKGHRRT YVGAMPGKMV QCLKSVGTAN PLVLIDEIDK LGRGHAGDPA SALLELLDPE
601: QNANFLDHYL DVTIDLSKVL FVCTANVIDM IPNPLLDRME VISIAGYITD EKVHIARDYL EKTARGDCGV KPEQVEVSDA ALLSLIENYC REAGVRNLQK
701: QIEKIYRKIA LKLVREGAVP EEPAVASDPE EAEIVADVGE SIENHTVEEN TVSSAEEPKE EAQTEKIAIE TVMIDESNLA DYVGKPVFHA EKLYEQTPVG
801: VVMGLAWTSM GGSTLYIETT VVEEGEGKGG LNITGQLGDV MKESAQIAHT VARKIMLEKE PENQFFANSK LHLHVPAGAT PKDGPSAGCT MITSLLSLAT
901: KKPVRKDLAM TGEVTLTGRI LPIGGVKEKT IAARRSQIKT IIFPEANRRD FDELAENVKE GLNVHFVDDY GKIFELAFGY DKQED

Arabidopsis Description

LON_ARA_ARAlon protease 1 [Source:TAIR;Acc:AT5G26860]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.