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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • plastid 3
  • mitochondrion 5
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:secretory
ChloroP:plastid
EpiLoc:mitochondrion
iPSORT:secretory
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:secretory
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU1Hr1G055380.1 Barley cytosol 25.86 96.6
Zm00001d022560_P001 Maize endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 93.74 94.69
KRH55202 Soybean cytosol 20.71 88.74
Zm00001d007202_P003 Maize plasma membrane 90.3 87.3
TraesCS2D01G094000.1 Wheat mitochondrion, plastid 85.35 86.14
TraesCS2B01G110800.1 Wheat mitochondrion, plastid 85.25 86.03
TraesCS2A01G095500.1 Wheat plastid 84.85 85.63
HORVU2Hr1G016000.1 Barley plastid 84.44 85.22
Os07t0689300-01 Rice mitochondrion 38.38 80.51
Solyc10g024320.1.1 Tomato cytosol 46.46 77.83
CDX88248 Canola cytosol 5.86 76.32
CDX80599 Canola cytosol 5.86 75.32
Bra009924.1-P Field mustard mitochondrion, plastid 70.3 75.08
CDY66499 Canola plastid 69.7 74.84
CDY05546 Canola plastid 69.7 74.59
VIT_14s0060g01230.t01 Wine grape mitochondrion, plastid 71.92 72.8
KRH33822 Soybean mitochondrion 70.3 72.42
KRG90539 Soybean mitochondrion 71.31 71.82
KXG39532 Sorghum mitochondrion 73.84 71.39
Solyc10g024310.1.1 Tomato mitochondrion, vacuole 8.38 70.94
Bra040521.1-P Field mustard cytosol 38.08 70.86
CDX88247 Canola plastid 51.52 70.83
CDX80598 Canola plastid 51.62 70.48
AT5G26860.1 Thale cress cytosol, plastid 69.9 70.25
CDY68112 Canola cytosol 5.86 69.88
CDY22820 Canola cytosol 5.86 69.88
CDY25200 Canola cytosol 5.76 68.67
AT3G05790.1 Thale cress plastid 63.84 67.09
GSMUA_Achr1P16010_001 Banana cytosol 5.76 67.06
GSMUA_Achr7P05610_001 Banana mitochondrion 71.21 66.76
CDY18802 Canola cytosol 32.73 65.45
Bra040254.1-P Field mustard plastid 58.89 65.14
CDY18823 Canola plastid 59.49 64.58
Bra020562.1-P Field mustard cytosol 70.81 63.9
AT3G05780.1 Thale cress mitochondrion, plastid 58.79 62.99
Bra018886.1-P Field mustard plastid 50.91 59.57
CDY22818 Canola plastid 50.91 59.57
Solyc10g024300.1.1 Tomato cytosol 13.84 59.05
CDX87027 Canola mitochondrion 9.9 58.68
AT3G05775.1 Thale cress cytosol, mitochondrion, peroxisome, plastid 7.88 58.21
CDY25198 Canola cytosol, mitochondrion 25.45 57.4
Bra018887.1-P Field mustard mitochondrion 38.99 54.99
CDX99569 Canola plastid 13.43 54.51
Bra018889.1-P Field mustard mitochondrion 52.42 53.84
CDY22821 Canola mitochondrion 52.42 53.07
CDY22819 Canola mitochondrion 36.06 52.65
CDY25199 Canola mitochondrion 38.08 46.43
CDY33341 Canola plastid 9.09 44.55
CDY18803 Canola cytosol 5.96 41.26
Bra040522.1-P Field mustard cytoskeleton, cytosol, peroxisome 11.72 40.7
CDY66234 Canola plastid 7.98 40.31
CDY25202 Canola cytosol 41.92 36.86
EER99247 Sorghum plastid 29.6 33.11
CDX80228 Canola endoplasmic reticulum, extracellular, mitochondrion, nucleus 4.14 17.15
Protein Annotations
Gene3D:1.10.8.60Gene3D:1.20.58.1480MapMan:19.4.2.4Gene3D:2.30.130.40Gene3D:3.30.230.10Gene3D:3.40.50.300
EntrezGene:8077511InterPro:AAA+_ATPaseInterPro:ATPase_AAA_coreUniProt:C5X6D0ncoils:CoilEnsemblPlants:EER97776
ProteinID:EER97776ProteinID:EER97776.1GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003824GO:GO:0004176GO:GO:0004252GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005759GO:GO:0006139
GO:GO:0006259GO:GO:0006508GO:GO:0006515GO:GO:0006950GO:GO:0007005GO:GO:0008150
GO:GO:0008152GO:GO:0008233GO:GO:0008236GO:GO:0009056GO:GO:0009058GO:GO:0009987
GO:GO:0016043GO:GO:0016787GO:GO:0016887GO:GO:0019538GO:GO:0030163GO:GO:0034599
GO:GO:0043565GO:GO:0051131GO:GO:0070361GO:GO:0070407GO:GO:0090296InterPro:IPR003111
InterPro:IPR008269InterPro:IPR014721InterPro:Lon_PrtaseInterPro:Lon_bac/euk-typInterPro:Lon_proteolyticInterPro:Lon_substr-bd
InterPro:Lonm_eukHAMAP:MF_03120InterPro:P-loop_NTPasePFAM:PF00004PFAM:PF02190PFAM:PF05362
PRINTS:PR00830ScanProsite:PS01046PFscan:PS51786PFscan:PS51787PANTHER:PTHR43718PANTHER:PTHR43718:SF2
InterPro:PUA-like_sfInterPro:Peptidase_S16_ASInterPro:Ribosomal_S5_D2-typ_foldInterPro:Ribosomal_S5_D2-typ_fold_subgrSMART:SM00382SMART:SM00464
EnsemblPlantsGene:SORBI_3002G426400SUPFAM:SSF52540SUPFAM:SSF54211SUPFAM:SSF88697unigene:Sbi.10066SignalP:SignalP-noTM
TIGRFAMs:TIGR00763UniParc:UPI0001A836ECRefSeq:XP_002461255.1SEG:seg::
Description
hypothetical protein
Coordinates
chr2:+:77298902..77308029
Molecular Weight (calculated)
108211.0 Da
IEP (calculated)
5.013
GRAVY (calculated)
-0.263
Length
990 amino acids
Sequence
(BLAST)
001: MLRAAAAAAA ILPVRFAAAP TVAAAEELRS PLLRVIGTLR GGRGSVLLGR RVRFCSNSSA SDSEAAAAEA KAEDATAAEG EADSKASSAI VSTNTNLDDC
101: LSVIALPLPH RPLFPGFYMP MYVKDQKLLQ ALIENRKRSA PYAGAFLVKD EEGTDPNIVT GSDSEKSIDD LKGKDLLKRL HEVGTLAQIT SIQGDQVVLF
201: GHRRLRITEM VEEDPLTVKV DHLKENPYNK DDDVMKATSF EVISTLRDVL RTSSLWKDHV QTYQQHIGDF NYQRLADFGA AISGANKLHC QEVLEELDVY
301: KRLKLTLELI KKEMEISKLQ QAIAKAIEEK ISGDQRRYLL NEQLKAIKKE LGLETDDKTA LSAKFKERIE LKKDKCPPHV LQVIEEELTK LQLLEASSSE
401: FSVTRNYLDW LTVLPWGNYS DENFDVHHAQ KILDEDHYGL NDVKERILEF IAVGKLRGTS QGKIICLSGP PGVGKTSIGR SIARALNRQF YRFSVGGLAD
501: VAEIKGHRRT YVGAMPGKMV QCLKSVGTAN PLVLIDEIDK LGKGHSGDPA SALLELLDPE QNVNFLDHYL DVPIDLSKVL FVCTANVIEM IPNPLLDRME
601: IIAIAGYITD EKVHIARDYL EKNTRQACGI KPQQVEVTDA ALLALIENYC REAGVRNLQK QIEKIYRKIA LQLVRQGVSN EPDQESPSVT VSEESSSGDS
701: TTAKDEILKD PAVEDASVAN NVTNPASEEA NEVNLTTEAP KEDNTSKGNK DTYGAAEDAA DKAIEKVVVD SSNLGDFVGK PVFQAERIYE QTPVGVVMGL
801: AWTAMGGSTL YIETTKVEEG EGKGALVLTG QLGDVMKESA QIAHTVGRAV LLEKEPDNQF FANSKLHLHV PAGSTPKDGP SAGCTMITSM LSLAMGMPVK
901: KDLAMTGEVT LTGRILPIGG VKEKTIAARR SAIKTLIFPA ANKRDFDELA SNVKEGLEVH FVDTYGEIYD LAFQSDAGTE TSLDDLALQD
Best Arabidopsis Sequence Match ( AT5G26860.1 )
(BLAST)
001: MKGFDTNLRL QASSPEFSNG FLPKRQNFIK LNRRNCYPRS SFSPTMLKLF TSSASRVHHL TPVSRVVGSS PVESPLFKAL SQITGWNRRS TSLGHRAFFC
101: SEPTNGEAAA EAETKAVESD SEVSDSKSSS AIVPTNPRPE DCLTVLALPV PHRPLFPGFY MPIYVKDPKV LAALQESRRR QAPYAGAFLL KDDPSADSSS
201: STDAEKNINE LKGKELLNRL HEVGTLAQIS SIQGDQVILV GHRRLRIKEM VSEEPLTVKV DHLKDNPFDM DDDVVKATSF EVISTLRDVL KTSSLWRDHV
301: QTYTQHIGDF TYPRLADFGA AICGANRHQA QEVLEELDVH KRLRLTLELM KKEMEISKIQ ETIAKAIEEK ISGEQRRYLL NEQLKAIKKE LGVETDDKSA
401: LSAKFKERIE PNKEKIPAHV LQVIEEELTK LQLLEASSSE FNVTRNYLDW LTILPWGNYS NENFDVARAQ TILDEDHYGL SDVKERILEF IAVGRLRGTS
501: QGKIICLSGP PGVGKTSIGR SIARALNRKF FRFSVGGLAD VAEIKGHRRT YVGAMPGKMV QCLKSVGTAN PLVLIDEIDK LGRGHAGDPA SALLELLDPE
601: QNANFLDHYL DVTIDLSKVL FVCTANVIDM IPNPLLDRME VISIAGYITD EKVHIARDYL EKTARGDCGV KPEQVEVSDA ALLSLIENYC REAGVRNLQK
701: QIEKIYRKIA LKLVREGAVP EEPAVASDPE EAEIVADVGE SIENHTVEEN TVSSAEEPKE EAQTEKIAIE TVMIDESNLA DYVGKPVFHA EKLYEQTPVG
801: VVMGLAWTSM GGSTLYIETT VVEEGEGKGG LNITGQLGDV MKESAQIAHT VARKIMLEKE PENQFFANSK LHLHVPAGAT PKDGPSAGCT MITSLLSLAT
901: KKPVRKDLAM TGEVTLTGRI LPIGGVKEKT IAARRSQIKT IIFPEANRRD FDELAENVKE GLNVHFVDDY GKIFELAFGY DKQED
Arabidopsis Description
LON_ARA_ARAlon protease 1 [Source:TAIR;Acc:AT5G26860]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.