CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25200	Canola	cytosol	18.45	97.59
CDY22820	Canola	cytosol	18.22	96.39
CDY68112	Canola	cytosol	18.0	95.18
CDX88248	Canola	cytosol	13.9	80.26
CDX80599	Canola	cytosol	13.9	79.22
HORVU1Hr1G055380.1	Barley	cytosol	34.17	56.6
KRH55202	Soybean	cytosol	29.16	55.41
CDY18803	Canola	cytosol	13.67	41.96
Os03t0306400-01	Rice	plasma membrane	6.61	39.73
CDY18802	Canola	cytosol	42.82	37.98
CDY22818	Canola	plastid	68.56	35.58
CDY22819	Canola	mitochondrion	52.16	33.78
CDY25202	Canola	cytosol	77.9	30.37
CDY22821	Canola	mitochondrion	67.2	30.16
AT3G05790.1	Thale cress	plastid	63.78	29.72
CDY05546	Canola	plastid	61.96	29.41
CDY66499	Canola	plastid	61.73	29.39
CDY18823	Canola	plastid	61.05	29.39
Os07t0689300-01	Rice	mitochondrion	31.21	29.03
CDX87027	Canola	mitochondrion	10.71	28.14
VIT_14s0060g01230.t01	Wine grape	mitochondrion, plastid	59.45	26.69
HORVU2Hr1G016000.1	Barley	plastid	57.63	25.79
TraesCS2D01G094000.1	Wheat	mitochondrion, plastid	57.63	25.79
TraesCS2B01G110800.1	Wheat	mitochondrion, plastid	57.4	25.69
TraesCS2A01G095500.1	Wheat	plastid	56.95	25.48
EER97776	Sorghum	plastid	57.4	25.45
CDX80598	Canola	plastid	41.0	24.83
KXG39532	Sorghum	mitochondrion	56.95	24.41
CDX88247	Canola	plastid	39.86	24.31
CDY25199	Canola	mitochondrion	44.42	24.01
CDY33510	Canola	mitochondrion, peroxisome	37.81	18.71
CDX77732	Canola	mitochondrion, peroxisome	37.81	18.71
CDX80228	Canola	endoplasmic reticulum, extracellular, mitochondrion, nucleus	6.15	11.3
CDX99569	Canola	plastid	0.91	1.64
CDY33341	Canola	plastid	0.68	1.49
CDY66234	Canola	plastid	0.0	0.0

Protein Annotations

MapMan:19.4.2.4	Gene3D:3.30.230.10	Gene3D:3.40.50.300	GO:A0A078GKT5	UniProt:A0A078GKT5	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	EnsemblPlants:CDY25198	ProteinID:CDY25198	ProteinID:CDY25198.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004176	GO:GO:0004252	GO:GO:0005488	GO:GO:0005524	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236	GO:GO:0009056	GO:GO:0016787
GO:GO:0019538	GO:GO:0030163	EnsemblPlantsGene:GSBRNA2T00029157001	InterPro:IPR008269	InterPro:IPR014721	InterPro:Lon_Prtase
InterPro:Lon_proteolytic	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF05362	ScanProsite:PS01046	PFscan:PS51786
PANTHER:PTHR43718	InterPro:Peptidase_S16_AS	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00382	SUPFAM:SSF52540
SUPFAM:SSF54211	UniParc:UPI0004EE663B	:	:	:	:

Description

BnaC06g04230DBnaC06g04230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKT5]

Coordinates

chrLK032170:+:341841..345568

Molecular Weight (calculated)

49074.0 Da

IEP (calculated)

6.952

GRAVY (calculated)

-0.377

Length

439 amino acids

Sequence
(BLAST)

001: MRKGRMGFNP KWKQEARRKG ETSSKVVLSV KQGRHWNTFR KRIEPIKEKV PKHVLEVIEE ELANLDRKEA DYGSTNRIYS YLDWLTALPW GKCSDENFDV
101: LRAEKILDED HYGLRVVKER ILEFIAVGNL TGNPEGRKII CLSGPPGVGK TSIARSVARA LGRKFFRLAV GGLSDSSEIK GDRRVYIAAT PGKMVQCLKK
201: VGTENPLVLL DEIDKLGKSR RDPEGAFLEL LDPEQNAHFL DHFLDVPIDL SKVLFVCTAN NIDRLPASAK AAMVDLDSSE TAAEGSIELK NEYLRLADVL
301: KVFEHAVDGG STRVESREVA EKFTVDESNL SDYVGATPKD GPSAGCTMIT SLLSLAMKKP IRKDLAMTGE VTLTGRILPI GGLKEKTMAA RRSQVKVIIF
401: PEANRRDFEG LEESVKERLD VHFVDEYEQI FELAFGDDH

Best Arabidopsis Sequence Match ( AT3G05780.1 )
(BLAST)

001: MMPKRFNTSG FDTTLRLPSY YGFLHLTQSL TLNSRVFYGA RHVTPPAIRI GSNPVQSLLL FRAPTQLTGW NRSSRDLLGR RVSFSDRSDG VDLLSSSPIL
101: STNPNLDDSL TVIALPLPHK PLIPGFYMPI HVKDPKVLAA LQESTRQQSP YVGAFLLKDC ASTDSSSRSE TEDNVVEKFK VKGKPKKKRR KELLNRIHQV
201: GTLAQISSIQ GEQVILVGRR RLIIEEMVSE DPLTVRVDHL KDKPYDKDNA VIKASYVEVI STLREVLKTN SLWRDQDIGD FSYQHLADFG AGISGANKHK
301: NQGVLTELDV HKRLELTLEL VKKQVEINKI KETDDGSSLS AKIRVRIDTK RDKIPKHVIK VMEEEFTKLE MLEENYSDFD LTYNYLHWLT VLPWGNFSYE
401: NFDVLRAKKI LDEDHYGLSD VKERILEFIA VGRLRGTSQG KIICLSGPPG VGKTSIGRSI ARALDRKFFR FSVGGLSDVA EIKGHCQTYV GAMPGKMVQC
501: LKSVGTANPL ILFDEIDKLG RCHTGDPASA LLEVMDPEQN AKFLDHFLNV TIDLSKVLFV CTANVIEMIP GPLLDRMEVI DLSGYVTDEK MHIARDYLVK
601: KTCRDCGIKP EHVDLSDAAL LSLIENYCRE AGVRNLQKQI EKIYRKVALE LVRQGAVSFD VTDTKDTKSL AKTDSEVKRM KVADIMKILE SATGDSTESK
701: TKQSGLVAKT FEKVMIDESN LADYVGKPVF QEEKIYEQTP VGVVMGLAWT SMGGSTLYIE TTFVEEGLGK GGLHITGQLG DVMKESAQIA HTVARRIMFE
801: KEPENLFFAN SKLHLHVPEG ATPKDGPSAG CTMITSFLSL AMKKLVRKDL AMTGEVTLTG RILPIGGVKE KTIAARRSQI KTIIFPEANR RDFEELAENM
901: KEGLDVHFVD EYEKIFDLAF NYDH

Arabidopsis Description

LON3Lon protease homolog 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M9L8]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.