CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33341	Canola	plastid	77.87	94.06
CDY66234	Canola	plastid	59.02	73.47
Solyc10g024300.1.1	Tomato	cytosol	31.97	33.62
CDX88247	Canola	plastid	62.7	21.25
CDX80598	Canola	plastid	62.7	21.1
CDY05546	Canola	plastid	66.39	17.51
CDY66499	Canola	plastid	63.93	16.92
HORVU1Hr1G055380.1	Barley	cytosol	17.21	15.85
TraesCS2A01G095500.1	Wheat	plastid	54.1	13.46
EER97776	Sorghum	plastid	54.51	13.43
TraesCS2B01G110800.1	Wheat	mitochondrion, plastid	53.69	13.35
TraesCS2D01G094000.1	Wheat	mitochondrion, plastid	53.69	13.35
HORVU2Hr1G016000.1	Barley	plastid	53.69	13.35
CDY18823	Canola	plastid	45.49	12.17
KXG39532	Sorghum	mitochondrion	49.59	11.82
CDY22819	Canola	mitochondrion	31.56	11.36
CDY25199	Canola	mitochondrion	33.2	9.98
CDY22821	Canola	mitochondrion	34.02	8.49
CDY22818	Canola	plastid	27.05	7.8
CDY33510	Canola	mitochondrion, peroxisome	17.21	4.74
CDX77732	Canola	mitochondrion, peroxisome	16.39	4.51
CDX80228	Canola	endoplasmic reticulum, extracellular, mitochondrion, nucleus	4.1	4.18
CDY18803	Canola	cytosol	1.64	2.8
CDY25202	Canola	cytosol	11.89	2.58
CDY25198	Canola	cytosol, mitochondrion	1.64	0.91
CDX87027	Canola	mitochondrion	0.41	0.6
Zm00001d043949_P001	Maize	cytosol, plastid	0.0	0.0
Os07t0689300-01	Rice	mitochondrion	0.0	0.0
Os03t0306400-01	Rice	plasma membrane	0.0	0.0
CDY68112	Canola	cytosol	0.0	0.0
CDY25200	Canola	cytosol	0.0	0.0
CDY22820	Canola	cytosol	0.0	0.0
CDY18802	Canola	cytosol	0.0	0.0
CDX88248	Canola	cytosol	0.0	0.0
CDX80599	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.58.1480	MapMan:35.1	GO:A0A078EFK6	EnsemblPlants:CDX99569	ProteinID:CDX99569	ProteinID:CDX99569.1
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004176	GO:GO:0004252
GO:GO:0005488	GO:GO:0005524	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	EnsemblPlantsGene:GSBRNA2T00108053001	InterPro:IPR003111	InterPro:Lon_Prtase
InterPro:Lon_substr-bd	PFAM:PF02190	PANTHER:PTHR43718	PANTHER:PTHR43718:SF2	SMART:SM00464	UniParc:UPI0004EE7B28
SEG:seg	:	:	:	:	:

Description

BnaC09g24230D

Coordinates

chrLK031911:-:1258119..1259985

Molecular Weight (calculated)

27939.7 Da

IEP (calculated)

9.628

GRAVY (calculated)

-0.619

Length

244 amino acids

Sequence
(BLAST)

001: MVSPPTCLVF HLKRMIKTHH NRRLSRSSRR LVRWFSSSPT YDDSISPHGV SSSGGRCLQF GDQLLDLSKH MLHRQLKQLD SNEESSLSSS ADMEKNINDL
101: KGKDLLKRLH EVGTLAQISS IQGDQVILVG HRRLRITEKV SEEPLTVKVD HLKDKPFDMD DDVIKATSFE VISTLRDVHK RLRLTLELMK KEREISKIQE
201: TIAKAIEEKI SGEQRRYLLN EQLKAIKKEL GVETDDKSAL SGEY

Best Arabidopsis Sequence Match ( AT3G05790.2 )
(BLAST)

001: MLKFLTPTAY ASHHVTPATR FRSTPVKNLL FKQLTLLTGW NRSSYELGRR SFSSDLDSDT KSSTTTVSAK PHLDDCLTVI ALPLPHKPLI PGFYMPIYVK
101: DPKVLAALQE SRRQQAPYAG AFLLKDDASS DSSSSSETEN ILEKLKGKEL INRIHEVGTL AQISSIQGEQ VILIGHRQLR ITEMVSESED PLTVKVDHLK
201: DKPYDKDDDV IKATYFQVMS TLRDVLKTTS LWRDHVRTYT QHIGEFNYPK LADFGAGISG ANKHQNQGVL EELDVHKRLE LTLELVKKEV EINKIQESIA
301: KAVEEKFSGD RRRIILKEQI NAIKKELGGE TDSKSALSEK FRGRIDPIKD KIPGHVLKVI EEELKKLQLL ETSSSEFDVT CNYLDWLTVL PWGNFSDENF
401: NVLRAEKILD EDHYGLSDVK ERILEFIAVG GLRGTSQGKI ICLSGPTGVG KTSIGRSIAR ALDRKFFRFS VGGLSDVAEI KGHRRTYIGA MPGKMVQCLK
501: NVGTENPLVL IDEIDKLGVR GHHGDPASAM LELLDPEQNA NFLDHYLDVP IDLSKVLFVC TANVTDTIPG PLLDRMEVIT LSGYITDEKM HIARDYLEKT
601: ARRDCGIKPE QVDVSDAAFL SLIEHYCREA GVRNLQKQIE KIFRKIALKL VRKAASTEVP RISDDVTTDT EETKSLAKTD LESPETSAEG STVLTDELAT
701: GDPTESTTEQ SGEVAETVEK YMIDESNLSD YVGKPVFQEE KIYEQTPVGV VMGLAWTSMG GSTLYIETTF VEEGEGKGGL HITGRLGDVM KESAEIAHTV
801: ARRIMLEKEP ENKLFANSKL HLHVPAGATP KDGPSAGCTM ITSLLSLALK KPVRKDLAMT GEVTLTGRIL AIGGVKEKTI AARRSQVKVI IFPEANRRDF
901: DELARNVKEG LEVHFVDEYE QIFELAFGYD H

Arabidopsis Description

LON4Lon protease homolog 4, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M9L7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.