CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22820	Canola	cytosol	98.8	98.8
CDY68112	Canola	cytosol	97.59	97.59
CDX88248	Canola	cytosol	74.7	81.58
CDX80599	Canola	cytosol	74.7	80.52
CDY18803	Canola	cytosol	61.45	35.66
CDY25198	Canola	cytosol, mitochondrion	97.59	18.45
CDY18802	Canola	cytosol	83.13	13.94
Os07t0689300-01	Rice	mitochondrion	69.88	12.29
CDY22818	Canola	plastid	90.36	8.87
CDY22821	Canola	mitochondrion	97.59	8.28
CDY18823	Canola	plastid	87.95	8.0
AT3G05790.1	Thale cress	plastid	86.75	7.64
CDY66499	Canola	plastid	80.72	7.27
CDY05546	Canola	plastid	80.72	7.24
CDY25202	Canola	cytosol	97.59	7.19
VIT_14s0060g01230.t01	Wine grape	mitochondrion, plastid	71.08	6.03
TraesCS2D01G094000.1	Wheat	mitochondrion, plastid	68.67	5.81
HORVU2Hr1G016000.1	Barley	plastid	68.67	5.81
KXG39532	Sorghum	mitochondrion	71.08	5.76
EER97776	Sorghum	plastid	68.67	5.76
TraesCS2A01G095500.1	Wheat	plastid	67.47	5.71
TraesCS2B01G110800.1	Wheat	mitochondrion, plastid	67.47	5.71
Os03t0306400-01	Rice	plasma membrane	3.61	4.11
CDX77732	Canola	mitochondrion, peroxisome	39.76	3.72
CDY33510	Canola	mitochondrion, peroxisome	39.76	3.72
CDY25199	Canola	mitochondrion	14.46	1.48
CDY22819	Canola	mitochondrion	10.84	1.33
CDX80228	Canola	endoplasmic reticulum, extracellular, mitochondrion, nucleus	3.61	1.26
CDX88247	Canola	plastid	4.82	0.56
CDX80598	Canola	plastid	4.82	0.55
CDY66234	Canola	plastid	0.0	0.0
HORVU1Hr1G055380.1	Barley	cytosol	0.0	0.0
CDY33341	Canola	plastid	0.0	0.0
KRH55202	Soybean	cytosol	0.0	0.0
CDX99569	Canola	plastid	0.0	0.0
CDX87027	Canola	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:3.30.230.10	MapMan:35.1	GO:A0A078GFE1	UniProt:A0A078GFE1	EnsemblPlants:CDY25200	ProteinID:CDY25200
ProteinID:CDY25200.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004176	GO:GO:0004252
GO:GO:0005488	GO:GO:0005524	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	EnsemblPlantsGene:GSBRNA2T00029160001	InterPro:IPR008269	InterPro:IPR014721
InterPro:Lon_Prtase	InterPro:Lon_proteolytic	PFAM:PF05362	PRINTS:PR00830	PFscan:PS51786	PANTHER:PTHR43718
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SUPFAM:SSF54211	UniParc:UPI0004EECA30	:	:

Description

BnaC06g04250DBnaC06g04250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFE1]

Coordinates

chrLK032170:+:360409..360795

Molecular Weight (calculated)

9595.6 Da

IEP (calculated)

6.535

GRAVY (calculated)

-0.424

Length

83 amino acids

Sequence
(BLAST)

1: MKKPVRKDLA MTGEVTLTGR ILPIGGLKEK TMAARRSQVK VIIFPEANRR DFEGLEESVK ERLDVHFVDE YEQIFELAFG YDH

Best Arabidopsis Sequence Match ( AT3G05790.1 )
(BLAST)

001: MLKFLTPTAY ASHHVTPATR FRSTPVKNLL FKQLTLLTGW NRSSYELGRR SFSSDLDSDT KSSTTTVSAK PHLDDCLTVI ALPLPHKPLI PGFYMPIYVK
101: DPKVLAALQE SRRQQAPYAG AFLLKDDASS DSSSSSETEN ILEKLKGKEL INRIHEVGTL AQISSIQGEQ VILIGHRQLR ITEMVSESED PLTVKVDHLK
201: DKPYDKDDDV IKATYFQVMS TLRDVLKTTS LWRDHVRTYT QACSLHIWHC LRHIGEFNYP KLADFGAGIS GANKHQNQGV LEELDVHKRL ELTLELVKKE
301: VEINKIQESI AKAVEEKFSG DRRRIILKEQ INAIKKELGG ETDSKSALSE KFRGRIDPIK DKIPGHVLKV IEEELKKLQL LETSSSEFDV TCNYLDWLTV
401: LPWGNFSDEN FNVLRAEKIL DEDHYGLSDV KERILEFIAV GGLRGTSQGK IICLSGPTGV GKTSIGRSIA RALDRKFFRF SVGGLSDVAE IKGHRRTYIG
501: AMPGKMVQCL KNVGTENPLV LIDEIDKLGV RGHHGDPASA MLELLDPEQN ANFLDHYLDV PIDLSKVLFV CTANVTDTIP GPLLDRMEVI TLSGYITDEK
601: MHIARDYLEK TARRDCGIKP EQVDVSDAAF LSLIEHYCRE AGVRNLQKQI EKIFRKIALK LVRKAASTEV PRISDDVTTD TEETKSLAKT DLESPETSAE
701: GSTVLTDELA TGDPTESTTE QSGEVAETVE KYMIDESNLS DYVGKPVFQE EKIYEQTPVG VVMGLAWTSM GGSTLYIETT FVEEGEGKGG LHITGRLGDV
801: MKESAEIAHT VARRIMLEKE PENKLFANSK LHLHVPAGAT PKDGPSAGCT MITSLLSLAL KKPVRKDLAM TGEVTLTGRI LAIGGVKEKT IAARRSQVKV
901: IIFPEANRRD FDELARNVKE GLEVHFVDEY EQIFELAFGY DH

Arabidopsis Description

LON4Lon protease homolog 4, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M9L7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.