CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G055380.1	Barley	cytosol	32.97	90.19
CDX88247	Canola	plastid	88.41	89.03
KRH55202	Soybean	cytosol	28.14	88.31
Bra009924.1-P	Field mustard	mitochondrion, plastid	82.62	64.62
CDY66499	Canola	plastid	81.24	63.88
CDX99569	Canola	plastid	21.1	62.7
CDY05546	Canola	plastid	79.72	62.49
AT5G26860.1	Thale cress	cytosol, plastid	80.28	59.09
CDY22819	Canola	mitochondrion	51.31	54.87
VIT_14s0060g01230.t01	Wine grape	mitochondrion, plastid	73.52	54.5
TraesCS2A01G095500.1	Wheat	plastid	70.34	51.99
TraesCS2B01G110800.1	Wheat	mitochondrion, plastid	70.34	51.99
TraesCS2D01G094000.1	Wheat	mitochondrion, plastid	70.34	51.99
HORVU2Hr1G016000.1	Barley	plastid	70.21	51.89
EER97776	Sorghum	plastid	70.48	51.62
CDY33341	Canola	plastid	14.21	50.99
CDY66234	Canola	plastid	13.52	50.0
CDY18823	Canola	plastid	62.34	49.56
CDY25199	Canola	mitochondrion	52.0	46.43
KXG39532	Sorghum	mitochondrion	65.38	46.29
CDY22818	Canola	plastid	51.03	43.74
CDY25198	Canola	cytosol, mitochondrion	24.83	41.0
Os03t0306400-01	Rice	plasma membrane	4.0	39.73
CDY22821	Canola	mitochondrion	53.38	39.57
CDY18802	Canola	cytosol	23.86	34.95
Os07t0689300-01	Rice	mitochondrion	18.34	28.18
CDY25202	Canola	cytosol	38.07	24.51
CDX77732	Canola	mitochondrion, peroxisome	28.69	23.45
CDY33510	Canola	mitochondrion, peroxisome	28.55	23.34
CDX87027	Canola	mitochondrion	4.41	19.16
CDX80228	Canola	endoplasmic reticulum, extracellular, mitochondrion, nucleus	4.55	13.81
CDY18803	Canola	cytosol	2.21	11.19
CDY68112	Canola	cytosol	0.55	4.82
CDY25200	Canola	cytosol	0.55	4.82
CDY22820	Canola	cytosol	0.55	4.82
CDX88248	Canola	cytosol	0.41	3.95
CDX80599	Canola	cytosol	0.41	3.9

Protein Annotations

Gene3D:1.10.8.60	Gene3D:1.20.58.1480	MapMan:19.4.2.4	Gene3D:2.30.130.40	Gene3D:3.40.50.300	GO:A0A078CZT2
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	EnsemblPlants:CDX80598	ProteinID:CDX80598	ProteinID:CDX80598.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004176	GO:GO:0004252	GO:GO:0005488
GO:GO:0005524	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016787
GO:GO:0019538	GO:GO:0030163	EnsemblPlantsGene:GSBRNA2T00133726001	InterPro:IPR003111	InterPro:Lon_Prtase	InterPro:Lon_bac/euk-typ
InterPro:Lon_substr-bd	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02190	PIRSF:PIRSF001174	PFscan:PS51787
PANTHER:PTHR43718	PANTHER:PTHR43718:SF2	InterPro:PUA-like_sf	SMART:SM00382	SMART:SM00464	SUPFAM:SSF52540
SUPFAM:SSF88697	TIGRFAMs:TIGR00763	UniParc:UPI0004EF0AFF	SEG:seg	:	:

Description

BnaC07g28460D

Coordinates

chrLK031821:+:1580458..1585371

Molecular Weight (calculated)

80499.8 Da

IEP (calculated)

6.666

GRAVY (calculated)

-0.284

Length

725 amino acids

Sequence
(BLAST)

001: MKGLDTNLRL QASPQLSNVF LPKRLTLVRN LNFRSSSSSS SSPAMLKLFS SRVHHLTPAI RPGPRSSVDS PLFKALSQLT GLNRRSSSLG HRAEAEVADS
101: KSSSAIVSTN PKPEDCLTVL ALPVPHRPLF PGFYMPIYVK DPKVLAALQE SRRRQAPYAG AFLLKDAPST DSSSSTDTEK NINELKGKDL LERLHEVGTL
201: AQISSIQGDQ VILVGHRRLR ITEMVSEEPL TVKVDHLKDK PFDMDDDVIK ATSFEVISTL RDVLKTSSLW RDHVQTYTQH IGDFTYPRLA DFGAAICGAN
301: RHQAQEVLEE LDVHKRLWLT LELMKKEMEI SKIQETIAKA IEEKISGEQR RYLLNEQLKA IKKELGVETD DKSALSGKFK ERIEPNKEKI PAHILQVIEE
401: ELTKLQLLEA SSSEFNVTRN YLDWLTILPW GNYSDENFDV VRAQQILDED HYGLSDVKER ILEFIAVGRL RGTSQGKIIC LSGPPGVGKT SIGRSIARAL
501: NRKFFRFSVG GLGDVAEIKG HRRTYVGAMP GKMVQCLKSV GTANPLVLID EIDKLGKGHA GDPASALLEL LDPEQNANFL DHYLDVTIDL SKVLFVCTAN
601: VIDMIPNPLL DRMEVISIAG YITDEKVHIA RDYLEKNARG DCGIKPEQVD VSDAALLSLI ENYCREAGVR NLQKQIEKIY RKIALKLVRE GAVPAEPAVT
701: SDVEEAEIVA KLDEGEASSP LQAAP

Best Arabidopsis Sequence Match ( AT5G26860.1 )
(BLAST)

001: MKGFDTNLRL QASSPEFSNG FLPKRQNFIK LNRRNCYPRS SFSPTMLKLF TSSASRVHHL TPVSRVVGSS PVESPLFKAL SQITGWNRRS TSLGHRAFFC
101: SEPTNGEAAA EAETKAVESD SEVSDSKSSS AIVPTNPRPE DCLTVLALPV PHRPLFPGFY MPIYVKDPKV LAALQESRRR QAPYAGAFLL KDDPSADSSS
201: STDAEKNINE LKGKELLNRL HEVGTLAQIS SIQGDQVILV GHRRLRIKEM VSEEPLTVKV DHLKDNPFDM DDDVVKATSF EVISTLRDVL KTSSLWRDHV
301: QTYTQHIGDF TYPRLADFGA AICGANRHQA QEVLEELDVH KRLRLTLELM KKEMEISKIQ ETIAKAIEEK ISGEQRRYLL NEQLKAIKKE LGVETDDKSA
401: LSAKFKERIE PNKEKIPAHV LQVIEEELTK LQLLEASSSE FNVTRNYLDW LTILPWGNYS NENFDVARAQ TILDEDHYGL SDVKERILEF IAVGRLRGTS
501: QGKIICLSGP PGVGKTSIGR SIARALNRKF FRFSVGGLAD VAEIKGHRRT YVGAMPGKMV QCLKSVGTAN PLVLIDEIDK LGRGHAGDPA SALLELLDPE
601: QNANFLDHYL DVTIDLSKVL FVCTANVIDM IPNPLLDRME VISIAGYITD EKVHIARDYL EKTARGDCGV KPEQVEVSDA ALLSLIENYC REAGVRNLQK
701: QIEKIYRKIA LKLVREGAVP EEPAVASDPE EAEIVADVGE SIENHTVEEN TVSSAEEPKE EAQTEKIAIE TVMIDESNLA DYVGKPVFHA EKLYEQTPVG
801: VVMGLAWTSM GGSTLYIETT VVEEGEGKGG LNITGQLGDV MKESAQIAHT VARKIMLEKE PENQFFANSK LHLHVPAGAT PKDGPSAGCT MITSLLSLAT
901: KKPVRKDLAM TGEVTLTGRI LPIGGVKEKT IAARRSQIKT IIFPEANRRD FDELAENVKE GLNVHFVDDY GKIFELAFGY DKQED

Arabidopsis Description

LON_ARA_ARAlon protease 1 [Source:TAIR;Acc:AT5G26860]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.