CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22820	Canola	cytosol	8.38	98.8
CDY68112	Canola	cytosol	8.28	97.59
CDY25200	Canola	cytosol	8.28	97.59
Bra018889.1-P	Field mustard	mitochondrion	90.29	91.6
CDX88248	Canola	cytosol	6.34	81.58
CDX80599	Canola	cytosol	6.34	80.52
CDY25199	Canola	mitochondrion	65.24	78.57
CDY22818	Canola	plastid	63.5	73.4
CDY22819	Canola	mitochondrion	49.59	71.53
CDY18802	Canola	cytosol	34.05	67.27
CDY25198	Canola	cytosol, mitochondrion	30.16	67.2
AT3G05790.1	Thale cress	plastid	60.94	63.27
CDY05546	Canola	plastid	56.75	60.0
CDY66499	Canola	plastid	56.44	59.87
CDY18823	Canola	plastid	55.83	59.87
KRH55202	Soybean	cytosol	13.8	58.44
Os07t0689300-01	Rice	mitochondrion	27.91	57.84
HORVU1Hr1G055380.1	Barley	cytosol	15.54	57.36
CDX87027	Canola	mitochondrion	9.71	56.89
VIT_14s0060g01230.t01	Wine grape	mitochondrion, plastid	55.42	55.42
TraesCS2D01G094000.1	Wheat	mitochondrion, plastid	53.99	53.82
HORVU2Hr1G016000.1	Barley	plastid	53.99	53.82
TraesCS2B01G110800.1	Wheat	mitochondrion, plastid	53.89	53.72
TraesCS2A01G095500.1	Wheat	plastid	53.68	53.52
CDX80598	Canola	plastid	39.57	53.38
CDX88247	Canola	plastid	38.96	52.92
EER97776	Sorghum	plastid	53.07	52.42
KXG39532	Sorghum	mitochondrion	52.35	50.0
CDY18803	Canola	cytosol	6.65	45.45
CDY25202	Canola	cytosol	50.82	44.14
Os03t0306400-01	Rice	plasma membrane	3.27	43.84
CDY33341	Canola	plastid	7.46	36.14
CDY66234	Canola	plastid	6.85	34.18
CDX99569	Canola	plastid	8.49	34.02
CDY33510	Canola	mitochondrion, peroxisome	26.99	29.76
CDX77732	Canola	mitochondrion, peroxisome	26.79	29.54
CDX80228	Canola	endoplasmic reticulum, extracellular, mitochondrion, nucleus	3.68	15.06

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.4.2.4	Gene3D:2.30.130.40	Gene3D:3.30.230.10	Gene3D:3.40.50.300	GO:A0A078GBR2
UniProt:A0A078GBR2	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	EnsemblPlants:CDY22821	ProteinID:CDY22821	ProteinID:CDY22821.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004176	GO:GO:0004252	GO:GO:0005488
GO:GO:0005524	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236
GO:GO:0009056	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	EnsemblPlantsGene:GSBRNA2T00021167001	InterPro:IPR003111
InterPro:IPR008269	InterPro:IPR014721	InterPro:Lon_Prtase	InterPro:Lon_bac/euk-typ	InterPro:Lon_proteolytic	InterPro:Lon_substr-bd
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02190	PFAM:PF05362	PRINTS:PR00830	ScanProsite:PS01046
PFscan:PS51786	PFscan:PS51787	PANTHER:PTHR43718	PANTHER:PTHR43718:SF2	InterPro:PUA-like_sf	InterPro:Peptidase_S16_AS
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00382	SMART:SM00464	SUPFAM:SSF52540	SUPFAM:SSF54211
SUPFAM:SSF88697	TIGRFAMs:TIGR00763	UniParc:UPI0004EDB658	SEG:seg	:	:

Description

BnaA06g02560DLon protease homolog [Source:UniProtKB/TrEMBL;Acc:A0A078GBR2]

Coordinates

chrLK032136:+:338474..343257

Molecular Weight (calculated)

109006.0 Da

IEP (calculated)

7.506

GRAVY (calculated)

-0.305

Length

978 amino acids

Sequence
(BLAST)

001: MLKLFTSHHV ASRFKNRSAH KLARRGFFST LTDSKPTNTV SAKPCIDDCQ TVVALPLLRK PLIPGFYMPL YVKDPKVLAA LQESKSGRAP YAGAFLLKDD
101: KYASTASSSS SFETVNILDS LKGKESLNKI HQVGTLAQIL SIQGEQVILI GRKRLQITEM LSEDPLTVKT HHIKDKPYDK DDEVIIKATY FEVISMLRDV
201: LETTSLWRDQ VKTYTQDIGG SNYRKLAETI LQKRRRKFTG FGAGIFEAID VFYQKLTGFG AGVFDANDLN YKKLADFGAG ISGANKHKIQ EVLEELDVHK
301: RLVLVKKQVE VDKIQVFHAS IFPESTAKTV EDKQEESGSA NYVEKTQPSD KFRERVYSKL ILEEIPKHVV KVMEEKFEKL DRGEKDSRST ESIYNYLDWL
401: TALPWGECSD DSFDVLRAEK ILDEDHYGLR DVKERILEFI AVGTLTSNPQ GRIICLSGPP GVGKTSIARS VARALNRKFF RIAVGGLSDS AEIKGERGIY
501: IGAAPGKMVQ CLKEVGTENP LVLLDEIDKL GKSSRDDPEG ALLELLDPQQ NTHFLDYFLD VTIDLSKVLF VCTANDTDKI SGPLLDRMEV IELAGYTTDE
601: KMHIARDYLL KNVKRKCGLK PEQVDVSDTA LLSLIENYCR EAGVRNIQKH IEKIFRKIAL KLVRQQASAL AAMTDLKSSE TDAKGSIELT NEYLRLADVL
701: KVFEYAVGGG PTREKSREIA LKLGRQQAST KAAKTDLKSY NEYLRLMELE YALAGGPMSD KSRAVPEFTI DASNLADYVG KPVFRGEKIY EQTPVGVVMG
801: LAWTSMGGST LYIETTFVEE GEGKGGLHIT GHLGKVMKES AEIAHTVARR IMFDKDPGNL FFANSKLHLH VPEGATPKDG PSAGCTMITS LLSLAMKKPV
901: RKDLAMTGEV TLTGRILPIG GLKEKTMAAR RSQVKVIIFP EANRRDFEGL EESVKEGLDV HFVDEYEQIF ELAFGHDH

Best Arabidopsis Sequence Match ( AT3G05790.2 )
(BLAST)

001: MLKFLTPTAY ASHHVTPATR FRSTPVKNLL FKQLTLLTGW NRSSYELGRR SFSSDLDSDT KSSTTTVSAK PHLDDCLTVI ALPLPHKPLI PGFYMPIYVK
101: DPKVLAALQE SRRQQAPYAG AFLLKDDASS DSSSSSETEN ILEKLKGKEL INRIHEVGTL AQISSIQGEQ VILIGHRQLR ITEMVSESED PLTVKVDHLK
201: DKPYDKDDDV IKATYFQVMS TLRDVLKTTS LWRDHVRTYT QHIGEFNYPK LADFGAGISG ANKHQNQGVL EELDVHKRLE LTLELVKKEV EINKIQESIA
301: KAVEEKFSGD RRRIILKEQI NAIKKELGGE TDSKSALSEK FRGRIDPIKD KIPGHVLKVI EEELKKLQLL ETSSSEFDVT CNYLDWLTVL PWGNFSDENF
401: NVLRAEKILD EDHYGLSDVK ERILEFIAVG GLRGTSQGKI ICLSGPTGVG KTSIGRSIAR ALDRKFFRFS VGGLSDVAEI KGHRRTYIGA MPGKMVQCLK
501: NVGTENPLVL IDEIDKLGVR GHHGDPASAM LELLDPEQNA NFLDHYLDVP IDLSKVLFVC TANVTDTIPG PLLDRMEVIT LSGYITDEKM HIARDYLEKT
601: ARRDCGIKPE QVDVSDAAFL SLIEHYCREA GVRNLQKQIE KIFRKIALKL VRKAASTEVP RISDDVTTDT EETKSLAKTD LESPETSAEG STVLTDELAT
701: GDPTESTTEQ SGEVAETVEK YMIDESNLSD YVGKPVFQEE KIYEQTPVGV VMGLAWTSMG GSTLYIETTF VEEGEGKGGL HITGRLGDVM KESAEIAHTV
801: ARRIMLEKEP ENKLFANSKL HLHVPAGATP KDGPSAGCTM ITSLLSLALK KPVRKDLAMT GEVTLTGRIL AIGGVKEKTI AARRSQVKVI IFPEANRRDF
901: DELARNVKEG LEVHFVDEYE QIFELAFGYD H

Arabidopsis Description

LON4Lon protease homolog 4, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M9L7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.