CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

mitochondrion 5
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
ATMG00090.1	Thale cress	cytosol, mitochondrion	92.92	70.86
Solyc09g015850.2.1	Tomato	nucleus	58.96	64.94
Solyc12g039000.1.1	Tomato	nucleus	33.49	62.83
GRMZM5G861791_P01	Maize	mitochondrion, plasma membrane	80.19	60.82
BAV58139	Barley	cytosol	75.24	56.86
TraesCS6B01G232600.1	Wheat	cytosol, nucleus, plastid	72.88	55.58
Solyc12g035820.1.1	Tomato	cytosol	17.22	54.48
Solyc05g045770.1.1	Tomato	cytosol	9.67	53.95
HORVU0Hr1G011510.1	Barley	cytosol	71.93	52.95
GSMUA_AchrUn_...	Banana	cytosol	48.35	45.45
Solyc03g063770.1.1	Tomato	cytosol	22.17	38.84
Solyc04g049590.1.1	Tomato	extracellular	9.43	36.7
HORVU4Hr1G059580.1	Barley	cytosol	13.21	29.47
TraesCS3B01G430800.1	Wheat	mitochondrion	8.49	22.22
TraesCS5A01G415800.1	Wheat	cytosol	4.72	20.83
TraesCS6B01G208000.1	Wheat	mitochondrion	7.31	19.25
Solyc02g021370.1.1	Tomato	cytosol, mitochondrion, nucleus	11.32	12.15
Solyc08g045870.2.1	Tomato	mitochondrion	3.54	11.72

Protein Annotations

MapMan:35.1	UniProt:A0A078I5X0	EnsemblPlants:CDY45492	ProteinID:CDY45492	ProteinID:CDY45492.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSBRNA2T00082146001	PANTHER:PTHR35928	UniParc:UPI0004EF282B	SEG:seg	:	:

Description

BnaCnng12510DBnaCnng12510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5X0]

Coordinates

chrLK032627:+:43590..46942

Molecular Weight (calculated)

49678.5 Da

IEP (calculated)

11.411

GRAVY (calculated)

-0.603

Length

424 amino acids

Sequence
(BLAST)

001: MARKGNPISV RLGKNRSSDS SRFNVNLRSY FGSIRPPTRL TFGFRLGRCI LLHFPKRTFI HFFLPRRPRR LKRREKTRPG KEKGRWWTTF GKAGPIGCLR
101: DDTEEERNEV RGRGARKRVE SIRLDDRKKQ NEIRGWPKKK QRYGYHDRSP SIKKNLSKSL RISGAFKHPK YAGVVNDIAF LIENDDSFRK TNYLRTLPAV
201: RPSLNFLVMQ YFFNTKNQMN FDPVVVLNHF VAPGAAEPST MGRANAQGRS LQKRIRSRIA FFVESSTSEK KCLAEAKNRL THFIRLANDL RFAGTTKTTI
301: SLFPFFGATF FFLRDGVGVY NNLDAREQLL NQLRVKCWNL LGKDKVMELI EKFKNLGGIE ELIKVIDMMI EIILRKRGIP YRYNSYFYEV KKMRSFLSNR
401: TNTKTLIERF QKGWRESVYV FPVD

Best Arabidopsis Sequence Match ( ATMG00090.1 )
(BLAST)

001: MARKGNPISV RLGKNRSSDS SRFSEYYYGK FVYQDVNLRS YFGSIRPPTR LTFGFRLGRC IILHFPKRTF IHFFLPRRPR RLKRREKTRP GKEKGRWWTT
101: FGKAGPIECL HSSDDTEEER NEVRGRGARK RVESIRLDDR KKQNEIRGWP KKKQRYGYHD RLPSIKKNLS KSLRISGAFK HPKYAGVVND IAFLIENDDS
201: FKKTKLFKLF FQNKSRSDGP TSYLRTLPAV RPSLNFLVMQ YFFNTKNQIN FDPVVVLNHF VAPGAAEPST MGRANAQGRS LQKRIRSRIA FFVESSTSEK
301: KCLAEAKNRL THFIRLANDL RFAGTTKTTI SLFPFFGATF FFLRDGVGVY NNLDAREQLL NQLRVKCWNL VGKDKIMELI EKLKNLGGIE ELIKVIDMMI
401: EIILRKRGIP YRYNSYFYEV KKMRSFLSNR TNTKTLIESV KIKSVYQSAS PIAQDISFQL KNKRRSFHSI FAKIVKEIPK GVEGIRICFS GRLKDAAEKA
501: QTKCYKHRKT SRNVFNHKID YAPAEVSTRY GISGVKVWIS YSQKKGRRAI SETYEI

Arabidopsis Description

Rps3 [Source:UniProtKB/TrEMBL;Acc:G1C2T6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.