Factsheet for Solyc09g015850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g035820.1.1	Tomato	cytosol	26.75	76.87
Solyc11g056400.1.1	Tomato	cytosol, nucleus	64.68	76.15
Solyc12g039000.1.1	Tomato	nucleus	39.22	66.81
Solyc05g045770.1.1	Tomato	cytosol	12.47	63.16
CDY45492	Canola	mitochondrion, plastid	64.94	58.96
Solyc03g063770.1.1	Tomato	cytosol	35.06	55.79
GRMZM5G861791_P01	Maize	mitochondrion, plasma membrane	77.92	53.67
Solyc04g049590.1.1	Tomato	extracellular	14.29	50.46
BAV58139	Barley	cytosol	73.51	50.45
TraesCS6B01G232600.1	Wheat	cytosol, nucleus, plastid	71.95	49.82
ATMG00090.1	Thale cress	cytosol, mitochondrion	71.43	49.46
HORVU0Hr1G011510.1	Barley	cytosol	73.51	49.13
Solyc05g045910.1.1	Tomato	mitochondrion	14.03	39.42
HORVU4Hr1G059580.1	Barley	cytosol	18.7	37.89
GSMUA_AchrUn_...	Banana	cytosol	38.96	33.26
TraesCS3B01G430800.1	Wheat	mitochondrion	12.99	30.86
Solyc05g045830.1.1	Tomato	cytosol, nucleus, peroxisome	28.05	29.27
TraesCS6B01G208000.1	Wheat	mitochondrion	11.43	27.33
Solyc08g045870.2.1	Tomato	mitochondrion	8.05	24.22
Solyc02g021370.1.1	Tomato	cytosol, mitochondrion, nucleus	21.56	21.01

Protein Annotations

EnsemblPlants:Solyc09g015850.2.1	EnsemblPlantsGene:Solyc09g015850.2	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
PANTHER:PTHR35928	UniParc:UPI000276BF27	UniProt:K4CS53	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr9:+:11297362..11299295

Molecular Weight (calculated)

44014.3 Da

IEP (calculated)

10.623

GRAVY (calculated)

-0.572

Length

385 amino acids

Sequence
(BLAST)

001: MNALMLPIKE KGRWGAFGKV GPIGCLHSSD GTEEERNEVR GRGAGKRVES IRLNDREKQN EIRIWPKKKQ GYGYRDRSPS IKKNLSKSLC VSGAFKHPKY
101: AGIENDIAFL IENDDSFRKT NLFKFFFPKK SRSDRPTSHL LKRTLPAVRP SLNYSVMQYL LNTKKKMHFD PVIVLNHFVA PGVAEPSTMG GANAQGRSLD
201: KRIRSCIAFF VESSTSEKKC LAEAKKRVTH FIRQANDLRF AGTTKTTISL SFLSSDAREQ LLGQLRRKCW NLMGKDKVME LIEKFIDLNR IGELIRGIEM
301: MIEIILRNRR IPYGYNYYLN EVQKMRSLLY NRTNTNTLIE SVNIKSVYQS ASPISNSEGY SISNEKGGGG DPYMLFRSIR RCRNS

Best Arabidopsis Sequence Match ( ATMG00090.1 )
(BLAST)

001: MARKGNPISV RLGKNRSSDS SRFSEYYYGK FVYQDVNLRS YFGSIRPPTR LTFGFRLGRC IILHFPKRTF IHFFLPRRPR RLKRREKTRP GKEKGRWWTT
101: FGKAGPIECL HSSDDTEEER NEVRGRGARK RVESIRLDDR KKQNEIRGWP KKKQRYGYHD RLPSIKKNLS KSLRISGAFK HPKYAGVVND IAFLIENDDS
201: FKKTKLFKLF FQNKSRSDGP TSYLRTLPAV RPSLNFLVMQ YFFNTKNQIN FDPVVVLNHF VAPGAAEPST MGRANAQGRS LQKRIRSRIA FFVESSTSEK
301: KCLAEAKNRL THFIRLANDL RFAGTTKTTI SLFPFFGATF FFLRDGVGVY NNLDAREQLL NQLRVKCWNL VGKDKIMELI EKLKNLGGIE ELIKVIDMMI
401: EIILRKRGIP YRYNSYFYEV KKMRSFLSNR TNTKTLIESV KIKSVYQSAS PIAQDISFQL KNKRRSFHSI FAKIVKEIPK GVEGIRICFS GRLKDAAEKA
501: QTKCYKHRKT SRNVFNHKID YAPAEVSTRY GISGVKVWIS YSQKKGRRAI SETYEI

Arabidopsis Description

Rps3 [Source:UniProtKB/TrEMBL;Acc:G1C2T6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.