Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g039000.1.1 | Tomato | nucleus | 53.21 | 76.99 |
| Solyc05g045910.1.1 | Tomato | mitochondrion | 29.66 | 70.8 |
| Solyc09g015850.2.1 | Tomato | nucleus | 76.15 | 64.68 |
| Solyc03g063770.1.1 | Tomato | cytosol | 36.09 | 48.76 |
| Solyc05g045770.1.1 | Tomato | cytosol | 10.7 | 46.05 |
| Solyc12g035820.1.1 | Tomato | cytosol | 17.74 | 43.28 |
| Solyc05g045830.1.1 | Tomato | cytosol, nucleus, peroxisome | 43.73 | 38.75 |
| Solyc02g021370.1.1 | Tomato | cytosol, mitochondrion, nucleus | 22.02 | 18.23 |
| Solyc04g049590.1.1 | Tomato | extracellular | 3.36 | 10.09 |
| Solyc08g045870.2.1 | Tomato | mitochondrion | 2.14 | 5.47 |
Protein Annotations
| EnsemblPlants:Solyc11g056400.1.1 | EnsemblPlantsGene:Solyc11g056400.1 | PANTHER:PTHR35928 | UniParc:UPI000276AAA2 | UniProt:K4D8V1 | MapMan:35.1 |
Description
No Description!
Coordinates
chr11:+:45393074..45394257
Molecular Weight (calculated)
37327.9 Da
IEP (calculated)
10.540
GRAVY (calculated)
-0.638
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAPPIKQEG RGSSHGGVTI DSIYYYGKSV YQDVNLRSYF GSIRPPTRLT FGFRLEEERN EVRGRGAGKR VESIRLDDRE KQNEIRIWPK KKQGYGYHDR
101: SPSIEKNLSK SLRVSGAFKH PKYAGIENDI AFLIENDDSF RKTNLFKFFF PKKSRSDRPT SHLLKRTHPA VRPSLNYSVM QYLLNTKKKM HFDPVVVLNH
201: FVAPGVAEPS TMGGVNAKGR SLDKRIRSCI AFLVESSTSE KKCLAEAKKR VTHFIRQAND LRFAGTTKTT ISDGVGVYNN LFFEDAREQL LGQLRRKCWN
301: LMGKDKVMEL IEKFIDLNRI GELIRXX
101: SPSIEKNLSK SLRVSGAFKH PKYAGIENDI AFLIENDDSF RKTNLFKFFF PKKSRSDRPT SHLLKRTHPA VRPSLNYSVM QYLLNTKKKM HFDPVVVLNH
201: FVAPGVAEPS TMGGVNAKGR SLDKRIRSCI AFLVESSTSE KKCLAEAKKR VTHFIRQAND LRFAGTTKTT ISDGVGVYNN LFFEDAREQL LGQLRRKCWN
301: LMGKDKVMEL IEKFIDLNRI GELIRXX
001: MARKGNPISV RLGKNRSSDS SRFSEYYYGK FVYQDVNLRS YFGSIRPPTR LTFGFRLGRC IILHFPKRTF IHFFLPRRPR RLKRREKTRP GKEKGRWWTT
101: FGKAGPIECL HSSDDTEEER NEVRGRGARK RVESIRLDDR KKQNEIRGWP KKKQRYGYHD RLPSIKKNLS KSLRISGAFK HPKYAGVVND IAFLIENDDS
201: FKKTKLFKLF FQNKSRSDGP TSYLRTLPAV RPSLNFLVMQ YFFNTKNQIN FDPVVVLNHF VAPGAAEPST MGRANAQGRS LQKRIRSRIA FFVESSTSEK
301: KCLAEAKNRL THFIRLANDL RFAGTTKTTI SLFPFFGATF FFLRDGVGVY NNLDAREQLL NQLRVKCWNL VGKDKIMELI EKLKNLGGIE ELIKVIDMMI
401: EIILRKRGIP YRYNSYFYEV KKMRSFLSNR TNTKTLIESV KIKSVYQSAS PIAQDISFQL KNKRRSFHSI FAKIVKEIPK GVEGIRICFS GRLKDAAEKA
501: QTKCYKHRKT SRNVFNHKID YAPAEVSTRY GISGVKVWIS YSQKKGRRAI SETYEI
101: FGKAGPIECL HSSDDTEEER NEVRGRGARK RVESIRLDDR KKQNEIRGWP KKKQRYGYHD RLPSIKKNLS KSLRISGAFK HPKYAGVVND IAFLIENDDS
201: FKKTKLFKLF FQNKSRSDGP TSYLRTLPAV RPSLNFLVMQ YFFNTKNQIN FDPVVVLNHF VAPGAAEPST MGRANAQGRS LQKRIRSRIA FFVESSTSEK
301: KCLAEAKNRL THFIRLANDL RFAGTTKTTI SLFPFFGATF FFLRDGVGVY NNLDAREQLL NQLRVKCWNL VGKDKIMELI EKLKNLGGIE ELIKVIDMMI
401: EIILRKRGIP YRYNSYFYEV KKMRSFLSNR TNTKTLIESV KIKSVYQSAS PIAQDISFQL KNKRRSFHSI FAKIVKEIPK GVEGIRICFS GRLKDAAEKA
501: QTKCYKHRKT SRNVFNHKID YAPAEVSTRY GISGVKVWIS YSQKKGRRAI SETYEI
Arabidopsis Description
Rps3 [Source:UniProtKB/TrEMBL;Acc:G1C2T6]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.