Factsheet for Solyc12g035820.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g049590.1.1	Tomato	extracellular	29.1	35.78
HORVU4Hr1G059580.1	Barley	cytosol	47.01	33.16
Solyc03g063770.1.1	Tomato	cytosol	48.51	26.86
Solyc09g015850.2.1	Tomato	nucleus	76.87	26.75
TraesCS3B01G430800.1	Wheat	mitochondrion	30.6	25.31
TraesCS6B01G208000.1	Wheat	mitochondrion	26.12	21.74
Solyc11g056400.1.1	Tomato	cytosol, nucleus	43.28	17.74
CDY45492	Canola	mitochondrion, plastid	54.48	17.22
GRMZM5G861791_P01	Maize	mitochondrion, plasma membrane	71.64	17.17
TraesCS6B01G232600.1	Wheat	cytosol, nucleus, plastid	67.91	16.37
BAV58139	Barley	cytosol	67.91	16.22
HORVU0Hr1G011510.1	Barley	cytosol	67.91	15.8
ATMG00090.1	Thale cress	cytosol, mitochondrion	64.18	15.47
Solyc08g045870.2.1	Tomato	mitochondrion	13.43	14.06
Solyc05g045910.1.1	Tomato	mitochondrion	14.18	13.87
GSMUA_AchrUn_...	Banana	cytosol	35.82	10.64
Solyc12g039000.1.1	Tomato	nucleus	15.67	9.29
Solyc02g021370.1.1	Tomato	cytosol, mitochondrion, nucleus	21.64	7.34
Solyc05g045830.1.1	Tomato	cytosol, nucleus, peroxisome	18.66	6.78
Solyc05g045770.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc12g035820.1.1	EnsemblPlantsGene:Solyc12g035820.1	PANTHER:PTHR35928	SEG:seg	UniParc:UPI0002769E96	UniProt:K4DE39
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:54327700..54328335

Molecular Weight (calculated)

15724.6 Da

IEP (calculated)

9.902

GRAVY (calculated)

-0.120

Length

134 amino acids

Sequence
(BLAST)

001: MHFDSIVVLN HFMAPGVAEP STIGGANAQV AREELLGQLM RKCWNIMGKD KVMELKEKFI DLNRIGELIR RIEMMIEIIL RNRRIFYRFN YYLNEVQKMR
101: SLLYNKKTLI PIIESDKIKS VYHSASPIAQ DMSF

Best Arabidopsis Sequence Match ( ATMG00090.1 )
(BLAST)

001: MARKGNPISV RLGKNRSSDS SRFSEYYYGK FVYQDVNLRS YFGSIRPPTR LTFGFRLGRC IILHFPKRTF IHFFLPRRPR RLKRREKTRP GKEKGRWWTT
101: FGKAGPIECL HSSDDTEEER NEVRGRGARK RVESIRLDDR KKQNEIRGWP KKKQRYGYHD RLPSIKKNLS KSLRISGAFK HPKYAGVVND IAFLIENDDS
201: FKKTKLFKLF FQNKSRSDGP TSYLRTLPAV RPSLNFLVMQ YFFNTKNQIN FDPVVVLNHF VAPGAAEPST MGRANAQGRS LQKRIRSRIA FFVESSTSEK
301: KCLAEAKNRL THFIRLANDL RFAGTTKTTI SLFPFFGATF FFLRDGVGVY NNLDAREQLL NQLRVKCWNL VGKDKIMELI EKLKNLGGIE ELIKVIDMMI
401: EIILRKRGIP YRYNSYFYEV KKMRSFLSNR TNTKTLIESV KIKSVYQSAS PIAQDISFQL KNKRRSFHSI FAKIVKEIPK GVEGIRICFS GRLKDAAEKA
501: QTKCYKHRKT SRNVFNHKID YAPAEVSTRY GISGVKVWIS YSQKKGRRAI SETYEI

Arabidopsis Description

Rps3 [Source:UniProtKB/TrEMBL;Acc:G1C2T6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.