Factsheet for Solyc02g021370.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G208000.1	Wheat	mitochondrion	18.48	45.34
TraesCS3B01G430800.1	Wheat	mitochondrion	18.23	44.44
Solyc08g045870.2.1	Tomato	mitochondrion	13.16	40.62
HORVU4Hr1G059580.1	Barley	cytosol	17.72	36.84
Solyc05g045910.1.1	Tomato	mitochondrion	10.89	31.39
Solyc03g063770.1.1	Tomato	cytosol	17.22	28.1
GSMUA_AchrUn_...	Banana	cytosol	29.87	26.16
GRMZM5G861791_P01	Maize	mitochondrion, plasma membrane	36.2	25.58
Solyc12g039000.1.1	Tomato	nucleus	13.67	23.89
BAV58139	Barley	cytosol	33.67	23.71
TraesCS6B01G232600.1	Wheat	cytosol, nucleus, plastid	32.91	23.38
HORVU0Hr1G011510.1	Barley	cytosol	33.67	23.09
ATMG00090.1	Thale cress	cytosol, mitochondrion	32.41	23.02
Solyc11g056400.1.1	Tomato	cytosol, nucleus	18.23	22.02
Solyc12g035820.1.1	Tomato	cytosol	7.34	21.64
Solyc09g015850.2.1	Tomato	nucleus	21.01	21.56
Solyc05g045830.1.1	Tomato	cytosol, nucleus, peroxisome	17.47	18.7
CDY45492	Canola	mitochondrion, plastid	12.15	11.32
Solyc04g049590.1.1	Tomato	extracellular	0.76	2.75
Solyc05g045770.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.40.420	Gene3D:3.30.1140.32	Gene3D:3.90.1170.10	MapMan:35.1	InterPro:CcO_II-like_C	InterPro:Cupredoxin
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0003824	GO:GO:0004129
GO:GO:0005198	GO:GO:0005215	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005762	GO:GO:0005840	GO:GO:0006091
GO:GO:0006412	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0019538	GO:GO:0019843	GO:GO:0022900	GO:GO:0032543	GO:GO:1902600
InterPro:IPR002429	InterPro:IPR008972	InterPro:IPR036419	InterPro:IPR036920	UniProt:K4B4Y7	PFAM:PF00116
PFAM:PF00189	PFAM:PF00252	PFscan:PS50857	PANTHER:PTHR12220	PANTHER:PTHR12220:SF18	InterPro:Ribosomal_L10e/L16
InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L16	InterPro:Ribosomal_S3_C	InterPro:Ribosomal_S3_C_sf	SUPFAM:SSF49503	SUPFAM:SSF54686
SUPFAM:SSF54821	EnsemblPlantsGene:Solyc02g021370.1	EnsemblPlants:Solyc02g021370.1.1	UniParc:UPI0002768818	SEG:seg	:

Description

No Description!

Coordinates

chr2:-:22567925..22572234

Molecular Weight (calculated)

44546.6 Da

IEP (calculated)

10.146

GRAVY (calculated)

-0.022

Length

395 amino acids

Sequence
(BLAST)

001: MRAFKHSKYT GIENNVAFWI EIDVSFIKTN LLKFFFPKKS RYDRLTSHLL KRTLPVVHPS LNYLVMRYLL NTKKKIHFDP IIVLNNFMVP GVTEPSKMEG
101: ANAHGKFKSI YQSASPIAQD ISFQPRDKTR SFHSIFSQIM KDIPLIIKKG VEGIYICCSC QLEGAEIAIT EWGTYGKAFR NVFNKKIDYA PAKVSTRYEI
201: LGVKAWISYL KKMGGTCYIR NVNNIVNIVK ADVVGVANRM VNNLVLEYMM GRGKANHTGW IALVYKGQIL FEMDGVSFSN AQKAATLAAH KLSSSTKFVQ
301: WSNDIRSGLW LDPVRSIGRL APIVCMSIGN LYSSVQLGLD RIGIYYGQCS EICGTNHAFM PIIVEAVPRK DYGSRVSNQL IPQSQINIQY LSALP

Best Arabidopsis Sequence Match ( ATMG00090.1 )
(BLAST)

001: MARKGNPISV RLGKNRSSDS SRFSEYYYGK FVYQDVNLRS YFGSIRPPTR LTFGFRLGRC IILHFPKRTF IHFFLPRRPR RLKRREKTRP GKEKGRWWTT
101: FGKAGPIECL HSSDDTEEER NEVRGRGARK RVESIRLDDR KKQNEIRGWP KKKQRYGYHD RLPSIKKNLS KSLRISGAFK HPKYAGVVND IAFLIENDDS
201: FKKTKLFKLF FQNKSRSDGP TSYLRTLPAV RPSLNFLVMQ YFFNTKNQIN FDPVVVLNHF VAPGAAEPST MGRANAQGRS LQKRIRSRIA FFVESSTSEK
301: KCLAEAKNRL THFIRLANDL RFAGTTKTTI SLFPFFGATF FFLRDGVGVY NNLDAREQLL NQLRVKCWNL VGKDKIMELI EKLKNLGGIE ELIKVIDMMI
401: EIILRKRGIP YRYNSYFYEV KKMRSFLSNR TNTKTLIESV KIKSVYQSAS PIAQDISFQL KNKRRSFHSI FAKIVKEIPK GVEGIRICFS GRLKDAAEKA
501: QTKCYKHRKT SRNVFNHKID YAPAEVSTRY GISGVKVWIS YSQKKGRRAI SETYEI

Arabidopsis Description

Rps3 [Source:UniProtKB/TrEMBL;Acc:G1C2T6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.