CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G232600.1	Wheat	cytosol, nucleus, plastid	94.83	95.68
HORVU0Hr1G011510.1	Barley	cytosol	96.43	93.92
GRMZM5G861791_P01	Maize	mitochondrion, plasma membrane	91.62	91.95
HORVU4Hr1G059580.1	Barley	cytosol	30.12	88.95
ATMG00090.1	Thale cress	cytosol, mitochondrion	76.11	76.8
CDY45492	Canola	mitochondrion, plastid	56.86	75.24
Solyc09g015850.2.1	Tomato	nucleus	50.45	73.51
GSMUA_AchrUn_...	Banana	cytosol	57.22	71.18
Solyc12g035820.1.1	Tomato	cytosol	16.22	67.91
Solyc12g039000.1.1	Tomato	nucleus	24.78	61.5
Solyc05g045770.1.1	Tomato	cytosol	7.66	56.58
HORVU1Hr1G033320.2	Barley	cytosol	18.54	55.32
Solyc08g045870.2.1	Tomato	mitochondrion	11.59	50.78
Solyc03g063770.1.1	Tomato	cytosol	20.86	48.35
Solyc04g049590.1.1	Tomato	extracellular	9.09	46.79
Solyc02g021370.1.1	Tomato	cytosol, mitochondrion, nucleus	23.71	33.67

Protein Annotations

MapMan:17.7.1.2.2	Gene3D:3.30.1140.32	GO:A0A1C9ZNZ7	UniProt:A0A1C9ZNZ7	ENA:AP017301.1:CDS:join(196402..196475,198218..199829)	EnsemblPlants:BAV58139
ProteinID:BAV58139	ProteinID:BAV58139.1	EnsemblPlantsGene:EPlHVUG00000039875	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036419	InterPro:KH_sf_prok-type	PFAM:PF00189
ScanProsite:PS00548	PANTHER:PTHR35928	InterPro:Ribosomal_S3_C	InterPro:Ribosomal_S3_CS	InterPro:Ribosomal_S3_C_sf	SUPFAM:SSF54814
SUPFAM:SSF54821	UniParc:UPI000864FEB7	SEG:seg	:	:	:

Description

ribosomal protein small subunit 3

Coordinates

chrMt:+:196402..199829

Molecular Weight (calculated)

64237.5 Da

IEP (calculated)

10.993

GRAVY (calculated)

-0.454

Length

561 amino acids

Sequence
(BLAST)

001: MARKGNPISV RLDLNRSSDP SRFSDYYYGK SLYQDVNLRS YFSSIRPPTK LAFGFRLGRC IILHFPKRTF IHFFLPGRSP RLKRKQDKKS RPVLQEKGWW
101: PTFGKVGPIG CLHSSEGTEE ERNEVRGRGA GKRVESIDRE KQNEIRIWPK KMQRYGYHDR SPSRKKNFDK SLRVSGAFKR PQYAGVVNDI PFLMGNAASL
201: LKRNRIKLFL PKKSRSDGPT SHLLKRTLPA VRPSLNYSVM QYFFNTKNKM HFDPVLILNH FVAPGVAEPS TMGGAKGGSL DKRIRSRIAF FLESSTSEKK
301: CLARAKKRLI HFIRQANDLR FAGTTKTTIS LFPFFGATFF FPRDGVGVYN NPFFEYAREQ LLAQFRIKCR NLMGKDKVME LIEKFIDLGR IGKLIKGIEM
401: MIEIILRKRI IPYGYNSYLN EVQKMRSFLS NRTNTNTLIE SVKIKSVYQS ASLIAQDISF QLRNNPISFR SIFSKIVKDI PLIMPKGVEG IRICCSGRLG
501: GAEIARTECG KYGKTSCNVF NHKIDYAPAE VSTRNGISGV KVRISYSKNK KGRAISETYE I

Best Arabidopsis Sequence Match ( ATMG00090.1 )
(BLAST)

001: MARKGNPISV RLGKNRSSDS SRFSEYYYGK FVYQDVNLRS YFGSIRPPTR LTFGFRLGRC IILHFPKRTF IHFFLPRRPR RLKRREKTRP GKEKGRWWTT
101: FGKAGPIECL HSSDDTEEER NEVRGRGARK RVESIRLDDR KKQNEIRGWP KKKQRYGYHD RLPSIKKNLS KSLRISGAFK HPKYAGVVND IAFLIENDDS
201: FKKTKLFKLF FQNKSRSDGP TSYLRTLPAV RPSLNFLVMQ YFFNTKNQIN FDPVVVLNHF VAPGAAEPST MGRANAQGRS LQKRIRSRIA FFVESSTSEK
301: KCLAEAKNRL THFIRLANDL RFAGTTKTTI SLFPFFGATF FFLRDGVGVY NNLDAREQLL NQLRVKCWNL VGKDKIMELI EKLKNLGGIE ELIKVIDMMI
401: EIILRKRGIP YRYNSYFYEV KKMRSFLSNR TNTKTLIESV KIKSVYQSAS PIAQDISFQL KNKRRSFHSI FAKIVKEIPK GVEGIRICFS GRLKDAAEKA
501: QTKCYKHRKT SRNVFNHKID YAPAEVSTRY GISGVKVWIS YSQKKGRRAI SETYEI

Arabidopsis Description

Rps3 [Source:UniProtKB/TrEMBL;Acc:G1C2T6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.