Factsheet for GRMZM5G861791_P01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G430800.1	Wheat	mitochondrion	27.19	93.83
BAV58139	Barley	cytosol	91.95	91.62
TraesCS6B01G208000.1	Wheat	mitochondrion	26.3	91.3
TraesCS6B01G232600.1	Wheat	cytosol, nucleus, plastid	88.73	89.21
HORVU4Hr1G059580.1	Barley	cytosol	29.7	87.37
HORVU0Hr1G011510.1	Barley	cytosol	88.37	85.76
ATMG00090.1	Thale cress	cytosol, mitochondrion	80.5	80.94
CDY45492	Canola	mitochondrion, plastid	60.82	80.19
Solyc09g015850.2.1	Tomato	nucleus	53.67	77.92
GSMUA_AchrUn_...	Banana	cytosol	59.93	74.28
Solyc12g035820.1.1	Tomato	cytosol	17.17	71.64
Solyc12g039000.1.1	Tomato	nucleus	27.37	67.7
Solyc05g045770.1.1	Tomato	cytosol	8.05	59.21
Solyc03g063770.1.1	Tomato	cytosol	23.79	54.96
Solyc08g045870.2.1	Tomato	mitochondrion	11.63	50.78
Solyc04g049590.1.1	Tomato	extracellular	9.12	46.79
Solyc02g021370.1.1	Tomato	cytosol, mitochondrion, nucleus	25.58	36.2
TraesCS5A01G415800.1	Wheat	cytosol	5.9	34.38

Protein Annotations

MapMan:17.7.1.2.2	Gene3D:3.30.1140.32	EntrezGene:4055860	EntrezGene:4055899	ProteinID:AAR91202.1	ProteinID:AAR91203.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0030529	EnsemblPlantsGene:GRMZM5G861791	EnsemblPlants:GRMZM5G861791_P01	EnsemblPlants:GRMZM5G861791_T01	InterPro:IPR036419	InterPro:KH_sf_prok-type
PFAM:PF00189	ScanProsite:PS00548	PANTHER:PTHR35928	UniProt:Q6R978	InterPro:Ribosomal_S3_C	InterPro:Ribosomal_S3_CS
InterPro:Ribosomal_S3_C_sf	SUPFAM:SSF54814	SUPFAM:SSF54821	UniParc:UPI0000233EDB	SEG:seg	:

Description

30S ribosomal protein S3, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q6R978]

Coordinates

chrMt:-:160501..164661

Molecular Weight (calculated)

64223.2 Da

IEP (calculated)

10.930

GRAVY (calculated)

-0.475

Length

559 amino acids

Sequence
(BLAST)

001: MARKGNPISV RLDLNRSSDP SRFSDYYYGK SLYQDVNLRS YFSSIRPPTR LTFGFRLGRC IILHFPKRTF IHFFLPRRPL RLKRRDKSRP GKDKGRWWAF
101: GKVGPIGCLH SSEGTEEERN EVRGRGAGKR VESIDREKQN EIRIWPKKMQ RYGYHDRSPS RKKNFSKSLR VSGAFKHPKY AGVVNDIAFL IENDDSFIKT
201: KLFKFFFLPK KSRSDGPTSH LLKRTLPAVR PSLNYSVMQY FFNTKNKMHF DPVVVLNHFV APGVAEPSTM GGAKGGSLDK RIRSRIAFFV ESSTSDKKCL
301: ARAKKRLIHF IRQANDLRFA GTTKTTISLF PFFGATFFFS RDGVGVYNNP FYEYAREQLL GQLRIKCRNL MGKDKVMELI EKFIDLGRIG KLIKGIEMMI
401: EIILRKRRIP YGYNSYLNEV QKMRSFLSNR TNTNTLIESV KIKSVYQSAS LIAQDISFQL RNNPISFRSI FSKIVKDIPL IMPKGVEGIR ICCSGRLGGA
501: EIARTECGKY GKTSCNVFNQ KIDYAPAEVS TRDGISGVKV RISYSQNKKG RAISETYEI

Best Arabidopsis Sequence Match ( ATMG00090.1 )
(BLAST)

001: MARKGNPISV RLGKNRSSDS SRFSEYYYGK FVYQDVNLRS YFGSIRPPTR LTFGFRLGRC IILHFPKRTF IHFFLPRRPR RLKRREKTRP GKEKGRWWTT
101: FGKAGPIECL HSSDDTEEER NEVRGRGARK RVESIRLDDR KKQNEIRGWP KKKQRYGYHD RLPSIKKNLS KSLRISGAFK HPKYAGVVND IAFLIENDDS
201: FKKTKLFKLF FQNKSRSDGP TSYLRTLPAV RPSLNFLVMQ YFFNTKNQIN FDPVVVLNHF VAPGAAEPST MGRANAQGRS LQKRIRSRIA FFVESSTSEK
301: KCLAEAKNRL THFIRLANDL RFAGTTKTTI SLFPFFGATF FFLRDGVGVY NNLDAREQLL NQLRVKCWNL VGKDKIMELI EKLKNLGGIE ELIKVIDMMI
401: EIILRKRGIP YRYNSYFYEV KKMRSFLSNR TNTKTLIESV KIKSVYQSAS PIAQDISFQL KNKRRSFHSI FAKIVKEIPK GVEGIRICFS GRLKDAAEKA
501: QTKCYKHRKT SRNVFNHKID YAPAEVSTRY GISGVKVWIS YSQKKGRRAI SETYEI

Arabidopsis Description

Rps3 [Source:UniProtKB/TrEMBL;Acc:G1C2T6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.