Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g056400.1.1 | Tomato | cytosol, nucleus | 76.99 | 53.21 |
| Solyc05g045910.1.1 | Tomato | mitochondrion | 27.43 | 45.26 |
| Solyc05g045770.1.1 | Tomato | cytosol | 14.16 | 42.11 |
| Solyc09g015850.2.1 | Tomato | nucleus | 66.81 | 39.22 |
| CDY45492 | Canola | mitochondrion, plastid | 62.83 | 33.49 |
| GRMZM5G861791_P01 | Maize | mitochondrion, plasma membrane | 67.7 | 27.37 |
| ATMG00090.1 | Thale cress | cytosol, mitochondrion | 65.49 | 26.62 |
| HORVU0Hr1G011510.1 | Barley | cytosol | 66.37 | 26.04 |
| Solyc05g045830.1.1 | Tomato | cytosol, nucleus, peroxisome | 42.48 | 26.02 |
| BAV58139 | Barley | cytosol | 61.5 | 24.78 |
| TraesCS6B01G232600.1 | Wheat | cytosol, nucleus, plastid | 59.29 | 24.1 |
| Solyc03g063770.1.1 | Tomato | cytosol | 25.22 | 23.55 |
| GSMUA_AchrUn_... | Banana | cytosol | 38.5 | 19.29 |
| Solyc12g035820.1.1 | Tomato | cytosol | 9.29 | 15.67 |
| Solyc02g021370.1.1 | Tomato | cytosol, mitochondrion, nucleus | 23.89 | 13.67 |
| Solyc08g045870.2.1 | Tomato | mitochondrion | 1.33 | 2.34 |
| Solyc04g049590.1.1 | Tomato | extracellular | 0.44 | 0.92 |
| HORVU4Hr1G059580.1 | Barley | cytosol | 0.0 | 0.0 |
| TraesCS3B01G430800.1 | Wheat | mitochondrion | 0.0 | 0.0 |
| TraesCS6B01G208000.1 | Wheat | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc12g039000.1.1 | EnsemblPlantsGene:Solyc12g039000.1 | PANTHER:PTHR35928 | SEG:seg | UniParc:UPI000276A65E | UniProt:K4DEP7 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:46127753..46128649
Molecular Weight (calculated)
25962.0 Da
IEP (calculated)
10.423
GRAVY (calculated)
-0.791
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRRSLLVCA GEWKPPVNQD ESVSSHGSSH SGVNMRYYFG SKCPPTRLTF RFRLEEERNE VKGRGEGKRV ESIRLDDREK QNEIRICPKK KQGYGYHDLS
101: PSIKKNLSKS LRVSGAFKHP KYAGIENDIV FLINNDDSFR KTNLFKFFIP KKFRSDRPTS HLLKRTLPQS TKKMHFDPFV VLNHFVAPGM DEPSTMGGDN
201: AEGRSLDKRI RSCIAFFVES STSEKN
101: PSIKKNLSKS LRVSGAFKHP KYAGIENDIV FLINNDDSFR KTNLFKFFIP KKFRSDRPTS HLLKRTLPQS TKKMHFDPFV VLNHFVAPGM DEPSTMGGDN
201: AEGRSLDKRI RSCIAFFVES STSEKN
001: MARKGNPISV RLGKNRSSDS SRFSEYYYGK FVYQDVNLRS YFGSIRPPTR LTFGFRLGRC IILHFPKRTF IHFFLPRRPR RLKRREKTRP GKEKGRWWTT
101: FGKAGPIECL HSSDDTEEER NEVRGRGARK RVESIRLDDR KKQNEIRGWP KKKQRYGYHD RLPSIKKNLS KSLRISGAFK HPKYAGVVND IAFLIENDDS
201: FKKTKLFKLF FQNKSRSDGP TSYLRTLPAV RPSLNFLVMQ YFFNTKNQIN FDPVVVLNHF VAPGAAEPST MGRANAQGRS LQKRIRSRIA FFVESSTSEK
301: KCLAEAKNRL THFIRLANDL RFAGTTKTTI SLFPFFGATF FFLRDGVGVY NNLDAREQLL NQLRVKCWNL VGKDKIMELI EKLKNLGGIE ELIKVIDMMI
401: EIILRKRGIP YRYNSYFYEV KKMRSFLSNR TNTKTLIESV KIKSVYQSAS PIAQDISFQL KNKRRSFHSI FAKIVKEIPK GVEGIRICFS GRLKDAAEKA
501: QTKCYKHRKT SRNVFNHKID YAPAEVSTRY GISGVKVWIS YSQKKGRRAI SETYEI
101: FGKAGPIECL HSSDDTEEER NEVRGRGARK RVESIRLDDR KKQNEIRGWP KKKQRYGYHD RLPSIKKNLS KSLRISGAFK HPKYAGVVND IAFLIENDDS
201: FKKTKLFKLF FQNKSRSDGP TSYLRTLPAV RPSLNFLVMQ YFFNTKNQIN FDPVVVLNHF VAPGAAEPST MGRANAQGRS LQKRIRSRIA FFVESSTSEK
301: KCLAEAKNRL THFIRLANDL RFAGTTKTTI SLFPFFGATF FFLRDGVGVY NNLDAREQLL NQLRVKCWNL VGKDKIMELI EKLKNLGGIE ELIKVIDMMI
401: EIILRKRGIP YRYNSYFYEV KKMRSFLSNR TNTKTLIESV KIKSVYQSAS PIAQDISFQL KNKRRSFHSI FAKIVKEIPK GVEGIRICFS GRLKDAAEKA
501: QTKCYKHRKT SRNVFNHKID YAPAEVSTRY GISGVKVWIS YSQKKGRRAI SETYEI
Arabidopsis Description
Rps3 [Source:UniProtKB/TrEMBL;Acc:G1C2T6]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.