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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 2
  • mitochondrion 4
  • cytosol 1
  • extracellular 2
  • golgi 1
  • plasma membrane 1
  • endoplasmic reticulum 1
  • vacuole 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:nucleus
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g035820.1.1 Tomato cytosol 35.78 29.1
TraesCS3B01G430800.1 Wheat mitochondrion 34.86 23.46
HORVU4Hr1G059580.1 Barley cytosol 40.37 23.16
TraesCS6B01G208000.1 Wheat mitochondrion 30.28 20.5
Solyc09g015850.2.1 Tomato nucleus 50.46 14.29
Solyc03g063770.1.1 Tomato cytosol 21.1 9.5
CDY45492 Canola mitochondrion, plastid 36.7 9.43
GRMZM5G861791_P01 Maize mitochondrion, plasma membrane 46.79 9.12
BAV58139 Barley cytosol 46.79 9.09
HORVU0Hr1G011510.1 Barley cytosol 46.79 8.85
TraesCS6B01G232600.1 Wheat cytosol, nucleus, plastid 44.04 8.63
Solyc08g045870.2.1 Tomato mitochondrion 10.09 8.59
ATMG00090.1 Thale cress cytosol, mitochondrion 40.37 7.91
GSMUA_AchrUn_... Banana cytosol 31.19 7.54
Solyc11g056400.1.1 Tomato cytosol, nucleus 10.09 3.36
Solyc02g021370.1.1 Tomato cytosol, mitochondrion, nucleus 2.75 0.76
Solyc05g045830.1.1 Tomato cytosol, nucleus, peroxisome 1.83 0.54
Solyc12g039000.1.1 Tomato nucleus 0.92 0.44
Solyc05g045910.1.1 Tomato mitochondrion 0.0 0.0
Solyc05g045770.1.1 Tomato cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:Solyc04g049590.1.1EnsemblPlantsGene:Solyc04g049590.1PANTHER:PTHR35928UniParc:UPI0002766816UniProt:K4BRT5MapMan:35.1
Description
No Description!
Coordinates
chr4:+:42565255..42565805
Molecular Weight (calculated)
12687.9 Da
IEP (calculated)
10.355
GRAVY (calculated)
0.022
Length
109 amino acids
Sequence
(BLAST)
001: MHRVKLLSFI AAKENAILIQ SEKRMPAKAV ALIGELIRGI EMMIDIILRN RRIPYGYNYY LNEVQKMRSL LYNRTNTNTL IEFVEYKAFS GWVCRLVSVH
101: SVKPEGKLV
Best Arabidopsis Sequence Match ( ATMG00090.1 )
(BLAST)
001: MARKGNPISV RLGKNRSSDS SRFSEYYYGK FVYQDVNLRS YFGSIRPPTR LTFGFRLGRC IILHFPKRTF IHFFLPRRPR RLKRREKTRP GKEKGRWWTT
101: FGKAGPIECL HSSDDTEEER NEVRGRGARK RVESIRLDDR KKQNEIRGWP KKKQRYGYHD RLPSIKKNLS KSLRISGAFK HPKYAGVVND IAFLIENDDS
201: FKKTKLFKLF FQNKSRSDGP TSYLRTLPAV RPSLNFLVMQ YFFNTKNQIN FDPVVVLNHF VAPGAAEPST MGRANAQGRS LQKRIRSRIA FFVESSTSEK
301: KCLAEAKNRL THFIRLANDL RFAGTTKTTI SLFPFFGATF FFLRDGVGVY NNLDAREQLL NQLRVKCWNL VGKDKIMELI EKLKNLGGIE ELIKVIDMMI
401: EIILRKRGIP YRYNSYFYEV KKMRSFLSNR TNTKTLIESV KIKSVYQSAS PIAQDISFQL KNKRRSFHSI FAKIVKEIPK GVEGIRICFS GRLKDAAEKA
501: QTKCYKHRKT SRNVFNHKID YAPAEVSTRY GISGVKVWIS YSQKKGRRAI SETYEI
Arabidopsis Description
Rps3 [Source:UniProtKB/TrEMBL;Acc:G1C2T6]
SUBAcon: [cytosol,mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.