CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69385
CDX76938
CDX89446
CDX96980
CDY13774
CDY25580
CDY68048

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39800.1	CDX76938	AT2G22240.1	21798944
AT4G39800.1	CDX89446	AT2G22240.1	21798944
AT4G39800.1	CDY13774	AT2G22240.1	21798944
AT4G39800.1	CDY25580	AT2G22240.1	21798944
AT4G39800.1	CDX69385	AT4G39800.1	21798944
AT4G39800.1	CDX96980	AT4G39800.1	21798944
AT4G39800.1	CDY68048	AT4G39800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69858	Canola	cytosol	79.18	73.21
TraesCS1A01G134900.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	35.1	66.15
Zm00001d037652_P001	Maize	cytosol	38.78	45.89
Zm00001d036866_P001	Maize	cytosol	38.78	41.3
CDY68048	Canola	cytosol	74.69	40.58
Solyc04g050820.1.1	Tomato	cytosol	48.57	40.2
CDY40084	Canola	cytosol	83.27	40.0
CDX85773	Canola	cytosol	82.45	39.61
CDY13774	Canola	cytosol	80.41	38.63
CDX76938	Canola	cytosol	80.41	38.63
Solyc05g051850.2.1	Tomato	cytosol	79.18	38.04
CDX69385	Canola	cytosol	79.18	38.04
CDY25580	Canola	cytosol	78.78	37.84
PGSC0003DMT400056192	Potato	cytosol	78.78	37.84
AT4G39800.1	Thale cress	cytosol	78.78	37.77
KRH59387	Soybean	cytosol	78.37	37.65
Solyc04g054740.2.1	Tomato	cytosol	78.37	37.65
PGSC0003DMT400071770	Potato	cytosol	78.37	37.65
CDX89446	Canola	cytosol	77.96	37.45
VIT_07s0031g00920.t01	Wine grape	cytosol	77.96	37.45
KRG97599	Soybean	cytosol	76.73	36.86
KRH31274	Soybean	cytosol	75.92	36.47
KRH43221	Soybean	cytosol	76.33	35.55
GSMUA_Achr1P21570_001	Banana	cytosol	72.65	34.9
KXG39973	Sorghum	cytosol	72.24	34.71
GSMUA_AchrUn_...	Banana	cytosol	72.24	34.71
TraesCS4B01G267200.1	Wheat	cytosol	72.24	34.71
TraesCS4D01G266700.1	Wheat	cytosol	72.24	34.71
Os03t0192700-01	Rice	cytosol	71.43	34.31
Zm00001d028180_P002	Maize	cytosol	72.24	34.04
Zm00001d023601_P002	Maize	golgi, plasma membrane	39.59	34.04
TraesCS4A01G038500.2	Wheat	cytosol	72.24	33.84
HORVU4Hr1G071730.1	Barley	cytosol	71.02	33.53
Zm00001d048201_P002	Maize	cytosol	70.61	33.27
Zm00001d014292_P001	Maize	cytosol	67.35	32.35
Os10t0369900-01	Rice	plastid	66.94	32.22
OQU91879	Sorghum	cytosol	66.53	31.96
Zm00001d030506_P001	Maize	cytosol	66.53	31.59
GSMUA_AchrUn_...	Banana	cytosol	74.29	29.84
Solyc04g050810.1.1	Tomato	cytosol	25.71	28.9
Zm00001d045455_P001	Maize	cytosol	27.35	17.18
Solyc04g050860.1.1	Tomato	cytosol	4.49	4.25

Protein Annotations

KEGG:00521+5.5.1.4	KEGG:00562+5.5.1.4	Gene3D:3.30.2360.10	Gene3D:3.30.360.10	MapMan:35.1	GO:A0A078E4K5
EnsemblPlants:CDX96980	ProteinID:CDX96980	ProteinID:CDX96980.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004512
GO:GO:0005975	GO:GO:0006021	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008654
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00103926001	InterPro:Myo-inos-1-P_Synthase	InterPro:Myo-inos-1-P_Synthase_GAPDH	InterPro:NAD(P)-bd_dom_sf
PFAM:PF01658	PFAM:PF07994	PANTHER:PTHR11510	PANTHER:PTHR11510:SF13	MetaCyc:PWY-2301	MetaCyc:PWY-4661
MetaCyc:PWY-6372	MetaCyc:PWY-6580	MetaCyc:PWY-6664	SUPFAM:SSF51735	SUPFAM:SSF55347	UniPathway:UPA00823
UniParc:UPI0004EBC8F1	:	:	:	:	:

Description

BnaC09g46450D

Coordinates

chrLK031897:-:21228..23427

Molecular Weight (calculated)

27381.6 Da

IEP (calculated)

6.231

GRAVY (calculated)

-0.258

Length

245 amino acids

Sequence
(BLAST)

001: MFIESFKVES PNVKYTENEI HSVYDYQTTE LVHESKNGVY QWTVLKPKTV KYEFKTDTHV PKLGVMLVGW GGNNGSTLRP TSIVSYNHLG NNDGMNLSAP
101: QTFRSKEISQ SNVVDDMVAS NGILFESGEH PDHVVVIKYV PYVGDSKRAM DEYTSEIFMG GKNTIVMHNT CEDSVLAAPI ILDLVLLAEL TTRIQFKAEY
201: EVCYCLGKVP FFPSGVYHPK LPLEGTNGPT RHASCERFVK TACNA

Best Arabidopsis Sequence Match ( AT2G22240.1 )
(BLAST)

001: MFIESFKVES PNVKYTENEI NSVYDYETTE VVHENRNGTY QWVVKPKTVK YDFKTDTRVP KLGVMLVGWG GNNGSTLTAG VIANKEGISW ATKDKVQQAN
101: YFGSLTQASS IRVGSYNGEE IYAPFKSLLP MVNPEDVVFG GWDISDMNLA DAMARARVLD IDLQKQLRPY MENMIPLPGI YDPDFIAANQ GSRANSVIKG
201: TKKEQVDHII KDMREFKEKN KVDKLVVLWT ANTERYSNVI VGLNDTTENL LASVEKDESE ISPSTLYAIA CVLEGIPFIN GSPQNTFVPG LIELAISKNC
301: LIGGDDFKSG QTKMKSVLVD FLVGAGIKPT SIVSYNHLGN NDGMNLSAPQ TFRSKEISKS NVVDDMVASN GILFEPGEHP DHVVVIKYVP YVADSKRAMD
401: EYTSEIFMGG RNTIVLHNTC EDSLLAAPII LDLVLLAELS TRIQFKAEGE GKFHSFHPVA TILSYLTKAP LVPPGTPVVN ALSKQRAMLE NILRACVGLA
501: PENNMIMEYK

Arabidopsis Description

IPS2Inositol-3-phosphate synthase isozyme 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38862]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.