CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG39973
OQU91879

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39800.1	KXG39973	AT2G22240.1	21798944
AT4G39800.1	OQU91879	AT2G22240.1	21798944
AT4G39800.1	KXG39973	AT4G39800.1	21798944
AT4G39800.1	OQU91879	AT4G39800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030506_P001	Maize	cytosol	95.69	94.57
Os10t0369900-01	Rice	plastid	88.24	88.41
KXG39973	Sorghum	cytosol	85.49	85.49
Bra009054.1-P	Field mustard	cytosol	30.2	83.7
Solyc04g050820.1.1	Tomato	cytosol	48.24	83.11
VIT_07s0031g00920.t01	Wine grape	cytosol	82.16	82.16
GSMUA_AchrUn_...	Banana	cytosol	82.16	82.16
GSMUA_Achr1P21570_001	Banana	cytosol	81.76	81.76
KRH59387	Soybean	cytosol	81.76	81.76
CDY13774	Canola	cytosol	81.76	81.76
Bra038538.1-P	Field mustard	cytosol	81.76	81.76
CDX76938	Canola	cytosol	81.57	81.57
Solyc05g051850.2.1	Tomato	cytosol	81.57	81.57
TraesCS1A01G134900.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.78	81.54
PGSC0003DMT400056192	Potato	cytosol	81.37	81.37
Bra028596.1-P	Field mustard	cytosol	81.18	81.18
CDX85773	Canola	cytosol	80.98	80.98
CDY40084	Canola	cytosol	80.98	80.98
AT2G22240.1	Thale cress	cytosol	80.98	80.98
Bra011830.1-P	Field mustard	cytosol	80.78	80.78
PGSC0003DMT400071770	Potato	cytosol	80.78	80.78
Bra030253.1-P	Field mustard	cytosol	80.78	80.78
KRG97599	Soybean	cytosol	80.78	80.78
CDY25580	Canola	cytosol	80.78	80.78
CDX69385	Canola	cytosol	80.59	80.59
AT5G10170.1	Thale cress	cytosol	80.59	80.59
CDX89446	Canola	cytosol	80.39	80.39
KRH31274	Soybean	cytosol	80.2	80.2
Solyc04g054740.2.1	Tomato	cytosol	80.2	80.2
CDY68048	Canola	cytosol	70.2	79.38
AT4G39800.1	Thale cress	cytosol	79.02	78.86
CDX69858	Canola	cytosol	39.22	75.47
KRH43221	Soybean	cytosol	76.47	74.14
GSMUA_AchrUn_...	Banana	cytosol	82.75	69.18
CDX96980	Canola	cytosol	31.96	66.53
Solyc04g050810.1.1	Tomato	cytosol	24.9	58.26
Solyc04g050860.1.1	Tomato	cytosol	29.22	57.53

Protein Annotations

KEGG:00521+5.5.1.4	KEGG:00562+5.5.1.4	MapMan:3.13.3.2.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	UniProt:A0A109NDL0
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004512	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006021	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008654	GO:GO:0009058	GO:GO:0009987	ProteinID:KXG18946.1	InterPro:Myo-inos-1-P_Synthase
InterPro:Myo-inos-1-P_Synthase_GAPDH	InterPro:NAD(P)-bd_dom_sf	EnsemblPlants:OQU91879	ProteinID:OQU91879	ProteinID:OQU91879.1	PFAM:PF01658
PFAM:PF07994	PIRSF:PIRSF015578	PANTHER:PTHR11510	PANTHER:PTHR11510:SF13	EnsemblPlantsGene:SORBI_3001G261416	SUPFAM:SSF51735
SUPFAM:SSF55347	UniParc:UPI00076BBF19	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:33803754..33808036

Molecular Weight (calculated)

55846.3 Da

IEP (calculated)

6.864

GRAVY (calculated)

-0.141

Length

510 amino acids

Sequence
(BLAST)

001: MFVESFRVDS PLVQYGDGEI QSEYRYDTTE VVPPGNGGGA GWMVRPKSVT YNFKTSTNVP KLGVMLVGWG GNNGTTLTAG VIANREGISW ETKEKVHKAN
101: YFGSLTQAST IRVGSHNGEE VYAPFKSLVP MVDPNSIVFG GWDISNLNMA DAMARAKVLD IHLQKQLRPY MESMLPLAGI FNPDFVAANQ GARANNIIKG
201: TKKEQVEQIK KDIREFKEKT KVDKIVVLWT ANTERYSNVV SGLNDTMDNL LASLEKNEAE ISPSTLYAIA CVFEGVPFVN GSPQNTFVPG LMELAIKKNS
301: VIGGDDFKSG QTKMKSVLVD FLVGAGIKPT SIASYNHLGN NDGMNLSAPQ VFRSKEISKS SVVDDMVASN PILYKLNEHP DHVIVIKYIP YVGDSKRAMD
401: EYTSEIFMGG KNTIVLHNTC EDSLLAAPII LDLVLLAELS TRIQLKAEGQ DKFHSFHPVA TILSYLSKAP LVPPGTPVVN ALAKQRAMLE NILRACIGLA
501: PENNMMLEHK

Best Arabidopsis Sequence Match ( AT2G22240.1 )
(BLAST)

001: MFIESFKVES PNVKYTENEI NSVYDYETTE VVHENRNGTY QWVVKPKTVK YDFKTDTRVP KLGVMLVGWG GNNGSTLTAG VIANKEGISW ATKDKVQQAN
101: YFGSLTQASS IRVGSYNGEE IYAPFKSLLP MVNPEDVVFG GWDISDMNLA DAMARARVLD IDLQKQLRPY MENMIPLPGI YDPDFIAANQ GSRANSVIKG
201: TKKEQVDHII KDMREFKEKN KVDKLVVLWT ANTERYSNVI VGLNDTTENL LASVEKDESE ISPSTLYAIA CVLEGIPFIN GSPQNTFVPG LIELAISKNC
301: LIGGDDFKSG QTKMKSVLVD FLVGAGIKPT SIVSYNHLGN NDGMNLSAPQ TFRSKEISKS NVVDDMVASN GILFEPGEHP DHVVVIKYVP YVADSKRAMD
401: EYTSEIFMGG RNTIVLHNTC EDSLLAAPII LDLVLLAELS TRIQFKAEGE GKFHSFHPVA TILSYLTKAP LVPPGTPVVN ALSKQRAMLE NILRACVGLA
501: PENNMIMEYK

Arabidopsis Description

IPS2Inositol-3-phosphate synthase isozyme 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38862]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.