CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69385
CDX76938
CDX89446
CDX96980
CDY13774
CDY25580
CDY68048

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39800.1	CDX76938	AT2G22240.1	21798944
AT4G39800.1	CDX89446	AT2G22240.1	21798944
AT4G39800.1	CDY13774	AT2G22240.1	21798944
AT4G39800.1	CDY25580	AT2G22240.1	21798944
AT4G39800.1	CDX69385	AT4G39800.1	21798944
AT4G39800.1	CDX96980	AT4G39800.1	21798944
AT4G39800.1	CDY68048	AT4G39800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011830.1-P	Field mustard	cytosol	99.22	99.22
CDY68048	Canola	cytosol	87.45	98.89
AT4G39800.1	Thale cress	cytosol	95.49	95.3
CDY13774	Canola	cytosol	94.9	94.9
CDX76938	Canola	cytosol	94.71	94.71
CDY25580	Canola	cytosol	94.12	94.12
CDX89446	Canola	cytosol	93.53	93.53
PGSC0003DMT400071770	Potato	cytosol	90.78	90.78
VIT_07s0031g00920.t01	Wine grape	cytosol	90.78	90.78
CDY40084	Canola	cytosol	90.59	90.59
CDX85773	Canola	cytosol	90.2	90.2
Solyc05g051850.2.1	Tomato	cytosol	90.2	90.2
Solyc04g054740.2.1	Tomato	cytosol	90.2	90.2
PGSC0003DMT400056192	Potato	cytosol	90.2	90.2
KRH59387	Soybean	cytosol	90.2	90.2
KRG97599	Soybean	cytosol	89.41	89.41
TraesCS4D01G266700.1	Wheat	cytosol	89.02	89.02
TraesCS4B01G267200.1	Wheat	cytosol	88.82	88.82
KRH31274	Soybean	cytosol	88.63	88.63
KXG39973	Sorghum	cytosol	88.63	88.63
Os03t0192700-01	Rice	cytosol	88.43	88.43
Solyc04g050820.1.1	Tomato	cytosol	51.18	88.18
Zm00001d037652_P001	Maize	cytosol	35.69	87.92
GSMUA_Achr1P21570_001	Banana	cytosol	87.25	87.25
GSMUA_AchrUn_...	Banana	cytosol	87.06	87.06
CDX69858	Canola	cytosol	45.1	86.79
TraesCS4A01G038500.2	Wheat	cytosol	88.82	86.62
Zm00001d048201_P002	Maize	cytosol	88.04	86.35
Zm00001d028180_P002	Maize	cytosol	88.04	86.35
Os10t0369900-01	Rice	plastid	83.14	83.3
Zm00001d014292_P001	Maize	cytosol	81.57	81.57
KRH43221	Soybean	cytosol	83.92	81.37
HORVU4Hr1G071730.1	Barley	cytosol	82.55	81.12
OQU91879	Sorghum	cytosol	80.59	80.59
Zm00001d030506_P001	Maize	cytosol	81.37	80.43
CDX96980	Canola	cytosol	38.04	79.18
Zm00001d036866_P001	Maize	cytosol	35.49	78.7
TraesCS1A01G134900.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.0	78.46
Zm00001d023601_P002	Maize	golgi, plasma membrane	41.37	74.04
GSMUA_AchrUn_...	Banana	cytosol	87.84	73.44
Zm00001d045455_P001	Maize	cytosol	55.1	72.05
Solyc04g050810.1.1	Tomato	cytosol	30.78	72.02
Solyc04g050860.1.1	Tomato	cytosol	32.16	63.32

Protein Annotations

KEGG:00521+5.5.1.4	KEGG:00562+5.5.1.4	MapMan:3.13.3.2.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:A0A078BX50
EnsemblPlants:CDX69385	ProteinID:CDX69385	ProteinID:CDX69385.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004512	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0006021	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008654	GO:GO:0009058
GO:GO:0009987	GO:GO:0016853	EnsemblPlantsGene:GSBRNA2T00131240001	InterPro:Myo-inos-1-P_Synthase	InterPro:Myo-inos-1-P_Synthase_GAPDH	InterPro:NAD(P)-bd_dom_sf
PFAM:PF01658	PFAM:PF07994	PIRSF:PIRSF015578	PANTHER:PTHR11510	PANTHER:PTHR11510:SF13	MetaCyc:PWY-2301
MetaCyc:PWY-4661	MetaCyc:PWY-6372	MetaCyc:PWY-6580	MetaCyc:PWY-6664	SUPFAM:SSF51735	SUPFAM:SSF55347
UniPathway:UPA00823	UniParc:UPI0004EE7B18	:	:	:	:

Description

BnaC01g00680D

Coordinates

chrLK031789:+:4466685..4469607

Molecular Weight (calculated)

56320.6 Da

IEP (calculated)

5.137

GRAVY (calculated)

-0.148

Length

510 amino acids

Sequence
(BLAST)

001: MFIESFKVES PNVKYTENEI HSVYDYETTE VVHENVNGAY QWIVKPKVVK YDFKTDTRVP KLGVMLVGWG GNNGSTLTAG VIANKEGISW ATKDKVQQAN
101: YFGSLTQASS IRVGSFNGEE IYAPFKSLVP MVNPDDVVFG GWDISDMNLA DAMGRAKVLD IDLQKQLRPY MESIVPLPGI YDPDFIAANQ GSRANNVIKG
201: TKKEQVDQII KDMREFKEKN KVDKVVVLWT ANTERYSNVI VGLNDTMENL MNSVDRDESE ISPSTLYAIA CVLEGIPFIN GSPQNTFVPG LIDLAIKNNV
301: LIGGDDFKSG QTKMKSVLVD FLVGAGIKPT SIVSYNHLGN NDGMNLSAPQ TFRSKEISKS NVVDDMVASN GILFEPGEHP DHVVVIKYVP YVADSKRAMD
401: EYTSEIFMGG KNTIVMHNTC EDSLLAAPII LDLVLLAELS TRIQFKSEKE GKFHSFHPVA TILSYLTKAP LVPPGTPVVN ALSKQRAMLE NILRACVGLA
501: PENNMILEYK

Best Arabidopsis Sequence Match ( AT4G39800.1 )
(BLAST)

001: MFIESFKVES PNVKYTENEI HSVYDYETTE VVHEKTVNGT YQWIVKPKTV KYDFKTDIRV PKLGVMLVGL GGNNGSTLTA GVIANKEGIS WATKDKVQQA
101: NYFGSLTQAS SIRVGSFNGE EIYAPFKSLL PMVNPDDVVF GGWDISDMNL ADAMARARVL DIDLQKQLRP YMENIVPLPG IFDPDFIAAN QGSRANHVIK
201: GTKKEQVDHI IKDMREFKEK NKVDKVVVLW TANTERYSNV VVGMNDTMEN LMESVDRDEA EISPSTLYAI ACVLEGIPFI NGSPQNTFVP GLIDMAIRNN
301: VLIGGDDFKS GQTKMKSVLV DFLVGAGIKP TSIVSYNHLG NNDGMNLSAP QTFRSKEISK SNVVDDMVAS NGILFEPGEH PDHVVVIKYV PYVADSKRAM
401: DEYTSEIFMG GKNTIVMHNT CEDSLLAAPI ILDLVLLAEL STRIQFKSEG EGKFHSFHPV ATILSYLTKA PLVPPGTPVI NALSKQRAML ENIMRACVGL
501: APENNMIMEF K

Arabidopsis Description

IPS1Inositol-3-phosphate synthase isozyme 1 [Source:UniProtKB/Swiss-Prot;Acc:P42801]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.