Factsheet for TraesCS1B01G190400.5

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G292000.1
TraesCS7B01G183000.7
TraesCS7D01G288000.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00570.1	TraesCS7A01G292000.1	AT2G18876.1	21798944
AT4G00570.1	TraesCS7B01G183000.7	AT2G18876.1	21798944
AT4G00570.1	TraesCS7D01G288000.2	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G164800.4	Wheat	mitochondrion, unclear	97.23	96.76
Os10t0503500-01	Rice	mitochondrion	88.6	87.74
KXG38219	Sorghum	mitochondrion	88.11	87.54
HORVU1Hr1G045720.1	Barley	plastid	96.91	81.84
Zm00001d013911_P001	Maize	mitochondrion	83.55	80.16
GSMUA_Achr1P00210_001	Banana	mitochondrion	75.41	76.66
VIT_15s0046g03670.t01	Wine grape	mitochondrion	75.08	76.2
Solyc01g094200.2.1	Tomato	plastid	72.96	74.54
KRH00689	Soybean	mitochondrion	72.31	74.0
Bra037347.1-P	Field mustard	mitochondrion	70.52	73.76
KRH48207	Soybean	mitochondrion	72.48	73.68
KRH65116	Soybean	mitochondrion	72.15	73.34
CDY51151	Canola	mitochondrion	72.48	73.31
CDY68746	Canola	mitochondrion	72.15	73.22
CDY07209	Canola	mitochondrion	72.48	73.07
CDX74340	Canola	mitochondrion	72.15	72.86
KRH40505	Soybean	mitochondrion	71.17	72.71
AT4G00570.1	Thale cress	mitochondrion	71.34	72.16
Bra000967.1-P	Field mustard	mitochondrion	72.31	71.61
PGSC0003DMT400000066	Potato	mitochondrion	73.13	71.61
TraesCS2B01G256800.1	Wheat	mitochondrion, unclear	63.19	62.28
TraesCS1B01G141700.1	Wheat	cytosol	38.27	41.23
TraesCS3B01G128000.1	Wheat	cytosol	38.11	39.59
TraesCS3B01G309300.1	Wheat	mitochondrion	37.3	36.88
TraesCS3B01G320200.1	Wheat	cytosol, peroxisome, plastid	37.46	36.05

Protein Annotations

MapMan:2.3.9	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0051287	GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf
InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106
PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF32	SMART:SM00919	SMART:SM01274
SUPFAM:SSF51735	SUPFAM:SSF53223	EnsemblPlantsGene:TraesCS1B01G190400	EnsemblPlants:TraesCS1B01G190400.5	SEG:seg	:

Description

No Description!

Coordinates

chr1B:-:341135696..341140792

Molecular Weight (calculated)

65792.2 Da

IEP (calculated)

7.092

GRAVY (calculated)

-0.162

Length

614 amino acids

Sequence
(BLAST)

001: MWRHAAARRS AQIRRLLSTS APSAGAVRGP CIVHKRGTDI LHDPWYNKDT AFPLTERDRL GLRGLXXXXX XXXXXXXXXX XNSYHSLEHN TQGEPDSVVS
101: LAKWRILNRL HDRNETLYYR VLIDNIKDFA PIIYTPTVGL VCENYSGLFR RPRGMYFSAK DKGEMMSMIY NWPAEKVDMI VVTDGSRILG LGDLGVQGIG
201: IPIGKLDVYV AAAGINPQKV LPIMLDVGTN NEELLEDKLY LGLRQPRLEG EEYLAVVDEF MEAVHARWPK AIVQFEDFQM KWAFETLQRY RSRFCMFNDD
301: VQGTAGVALA GLLGAVRAQG RPLADFTKQK IVVVGAGSAG IGVLNMAKHA MLRMPGTHKI GELGEGHNQF WVLDKDGLIT KSRKDLDPAV ARFARGYGPE
401: EVEDLHEGAS LVEVVKKVKP HVLLGLSGVG GIFNEEVLKA MKESDSPCPA IFAMSNPTTK AECTPEDVFK HVGENAVFAS GSPFSNVTLS NGRKGYANQA
501: NNMYLFPGIG LGALLSGARH ISDGMLHAAA ECLASYITDD AIRKGILFPS ISSIRHITAR VGAAVARAAV DEDLAEGCSD LDPRDLRSMS ESDTVDYVAR
601: KMWYPVYSPL VNDK

Best Arabidopsis Sequence Match ( AT4G00570.1 )
(BLAST)

001: MMWKNIAGLS KAAAAARTHG SRRCFSTAIP GPCIVHKRGA DILHDPWFNK DTGFPLTERD RLGIRGLLPP RVMTCVQQCD RFIESFRSLE NNTKGEPENV
101: VALAKWRMLN RLHDRNETLY YRVLIDNIKD FAPIIYTPTV GLVCQNYSGL YRRPRGMYFS AKDKGEMMSM IYNWPAPQVD MIVITDGSRI LGLGDLGVQG
201: IGIPIGKLDM YVAAAGINPQ RVLPIMLDVG TNNEKLLQND LYLGVRQPRL EGEEYLEIID EFMEAAFTRW PKAVVQFEDF QAKWAFGTLE RYRKKFCMFN
301: DDVQGTAGVA LAGLLGTVRA QGRPISDFVN QKIVVVGAGS AGLGVTKMAV QAVARMAGIS ESEATKNFYL IDKDGLVTTE RTKLDPGAVL FAKNPAEIRE
401: GASIVEVVKK VRPHVLLGLS GVGGIFNEEV LKAMRESDSC KPAIFAMSNP TLNAECTAAD AFKHAGGNIV FASGSPFENV ELENGKVGHV NQANNMYLFP
501: GIGLGTLLSG ARIVTDGMLQ AASECLASYM TDEEVQKGIL YPSINNIRHI TAEVGAAVLR AAVTDDIAEG HGDVGPKDLS HMSKEDTVNY ITRNMWFPVY
601: SPLVHEK

Arabidopsis Description

NAD-ME2NAD-dependent malic enzyme 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L7K9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.