CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY30300
CDY52581
CDY52582

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00570.1	CDY30300	AT2G18876.1	21798944
AT4G00570.1	CDY52581	AT2G18876.1	21798944
AT4G00570.1	CDY52582	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68746	Canola	mitochondrion	99.18	99.67
CDY07209	Canola	mitochondrion	97.37	97.21
CDY51151	Canola	mitochondrion	97.04	97.2
Bra000967.1-P	Field mustard	mitochondrion	98.52	96.61
AT4G00570.1	Thale cress	mitochondrion	91.61	91.76
VIT_15s0046g03670.t01	Wine grape	mitochondrion	83.88	84.3
CDY33808	Canola	endoplasmic reticulum, extracellular	4.77	82.86
KRH48207	Soybean	mitochondrion	82.07	82.62
KRH65116	Soybean	mitochondrion	81.25	81.79
KRH00689	Soybean	mitochondrion	79.61	80.67
Solyc01g094200.2.1	Tomato	plastid	79.44	80.37
KRH40505	Soybean	mitochondrion	79.28	80.2
PGSC0003DMT400000066	Potato	mitochondrion	79.44	77.03
GSMUA_Achr1P00210_001	Banana	mitochondrion	75.33	75.83
KXG38219	Sorghum	mitochondrion	75.82	74.6
Os10t0503500-01	Rice	mitochondrion	75.49	74.03
TraesCS1D01G164800.4	Wheat	mitochondrion, unclear	75.0	73.91
TraesCS1B01G190400.5	Wheat	mitochondrion	72.86	72.15
Zm00001d013911_P001	Maize	mitochondrion	72.04	68.44
HORVU1Hr1G045720.1	Barley	plastid	75.33	63.0
CDY37211	Canola	mitochondrion	62.5	61.49
CDX81448	Canola	mitochondrion	62.5	61.49
CDY35901	Canola	cytosol	37.83	39.52
CDX70409	Canola	cytosol	37.99	39.29
CDX78432	Canola	cytosol	37.99	39.29
CDX88203	Canola	cytosol	37.66	38.95
CDX80544	Canola	cytosol	37.66	38.95
CDY61446	Canola	cytosol	37.34	38.61
CDX91199	Canola	cytosol	37.34	38.61
CDX82748	Canola	cytosol	35.53	37.05
CDX68115	Canola	plastid	37.17	34.61
CDX85926	Canola	plastid	34.87	33.81
CDY02046	Canola	mitochondrion	30.26	32.92

Protein Annotations

MapMan:2.3.9	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	GO:A0A078CC01	EnsemblPlants:CDX74340	ProteinID:CDX74340
ProteinID:CDX74340.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470	GO:GO:0004471
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00112143001
InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072	ScanProsite:PS00331
PANTHER:PTHR23406	PANTHER:PTHR23406:SF32	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735	SUPFAM:SSF53223
UniParc:UPI0004EE777B	SEG:seg	:	:	:	:

Description

BnaA03g27070D

Coordinates

chrLK031800:-:2288087..2293730

Molecular Weight (calculated)

66939.8 Da

IEP (calculated)

7.309

GRAVY (calculated)

-0.087

Length

608 amino acids

Sequence
(BLAST)

001: MMWRNIARFS KTAAAAGRTG GSRRCLSTAI PGPCIVHKRG SDILHDPWFN KDTGFPLTER DRLGLRGLLP PRIISFEQQY DRFIESFRSL ERNTLGQPDN
101: VVSLAKWRIL NRLHDRNETL YYRVLIDNIK DFAPIIYTPT VGLVCQNYSG LYRRPRGMYF SAKDKGEMMS MIYNWPAHQV DMIVITDGSR ILGLGDLGVQ
201: GIGIPIGKLD MYVAAAGINP QRVLPIMLDV GTNNQKLLQN PLYLGLRQPR LEGDEYLGII DEFMEAAFTR WPKAVVQFED FQAKWAFETL DRYRKKFCMF
301: NDDVQGTAGV ALAGLLGTVR AQGRPLSDFV NQKIVVVGAG SAGLGVTKTA AQAVARMAGI SFAEATKNFY LIDKDGLVTT ERSKLDPAVV PFAKNPAEIR
401: EGASIVEVVK TVRPHVLLGL SGVGGIFNEE VLKAMRESDS CKPAIFAMSN PTLNAECTAA DAFKHAGENI VFGSGSPFEN VQLENGNVGH VNQANNMYLF
501: PGIGLGTLLS GARIVTDGML LAAAECLASY MTDEEVQKGI LYPSINNIRH ITAEVGAAVL RAAVSDDIVE GHGDVGPRDL SHMSKEETVD YITRNMWFPI
601: YSPLVHEK

Best Arabidopsis Sequence Match ( AT4G00570.1 )
(BLAST)

001: MMWKNIAGLS KAAAAARTHG SRRCFSTAIP GPCIVHKRGA DILHDPWFNK DTGFPLTERD RLGIRGLLPP RVMTCVQQCD RFIESFRSLE NNTKGEPENV
101: VALAKWRMLN RLHDRNETLY YRVLIDNIKD FAPIIYTPTV GLVCQNYSGL YRRPRGMYFS AKDKGEMMSM IYNWPAPQVD MIVITDGSRI LGLGDLGVQG
201: IGIPIGKLDM YVAAAGINPQ RVLPIMLDVG TNNEKLLQND LYLGVRQPRL EGEEYLEIID EFMEAAFTRW PKAVVQFEDF QAKWAFGTLE RYRKKFCMFN
301: DDVQGTAGVA LAGLLGTVRA QGRPISDFVN QKIVVVGAGS AGLGVTKMAV QAVARMAGIS ESEATKNFYL IDKDGLVTTE RTKLDPGAVL FAKNPAEIRE
401: GASIVEVVKK VRPHVLLGLS GVGGIFNEEV LKAMRESDSC KPAIFAMSNP TLNAECTAAD AFKHAGGNIV FASGSPFENV ELENGKVGHV NQANNMYLFP
501: GIGLGTLLSG ARIVTDGMLQ AASECLASYM TDEEVQKGIL YPSINNIRHI TAEVGAAVLR AAVTDDIAEG HGDVGPKDLS HMSKEDTVNY ITRNMWFPVY
601: SPLVHEK

Arabidopsis Description

NAD-ME2NAD-dependent malic enzyme 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L7K9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.