Factsheet for GSMUA_Achr1P00210_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P20560_001
GSMUA_Achr7P05020_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00570.1	GSMUA_Achr4P20560_001	AT2G18876.1	21798944
AT4G00570.1	GSMUA_Achr7P05020_001	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0046g03670.t01	Wine grape	mitochondrion	81.46	81.32
KRH65116	Soybean	mitochondrion	79.64	79.64
Solyc01g094200.2.1	Tomato	plastid	78.81	79.2
KRH48207	Soybean	mitochondrion	79.14	79.14
KRH00689	Soybean	mitochondrion	78.48	79.0
KRH40505	Soybean	mitochondrion	78.15	78.54
KXG38219	Sorghum	mitochondrion	78.97	77.18
TraesCS1D01G164800.4	Wheat	mitochondrion, unclear	78.81	77.15
Os10t0503500-01	Rice	mitochondrion	78.64	76.61
PGSC0003DMT400000066	Potato	mitochondrion	78.97	76.08
Bra037347.1-P	Field mustard	mitochondrion	73.84	75.98
CDY68746	Canola	mitochondrion	75.83	75.7
TraesCS1B01G190400.5	Wheat	mitochondrion	76.66	75.41
CDX74340	Canola	mitochondrion	75.83	75.33
CDY51151	Canola	mitochondrion	75.66	75.29
CDY07209	Canola	mitochondrion	75.5	74.88
AT4G00570.1	Thale cress	mitochondrion	74.5	74.14
Bra000967.1-P	Field mustard	mitochondrion	75.17	73.23
Zm00001d013911_P001	Maize	mitochondrion	75.17	70.94
HORVU1Hr1G045720.1	Barley	plastid	78.81	65.47
GSMUA_Achr7P06830_001	Banana	mitochondrion	66.06	63.53
GSMUA_Achr7P13690_001	Banana	cytosol	40.07	42.09
GSMUA_AchrUn_...	Banana	cytosol	40.73	41.69
GSMUA_Achr10P...	Banana	plastid	39.57	36.27
GSMUA_Achr3P31710_001	Banana	cytosol	38.74	35.89

Protein Annotations

MapMan:2.3.9	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006108	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491
GO:GO:0042803	GO:GO:0046872	GO:GO:0050897	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr1G00210_001
EnsemblPlants:GSMUA_Achr1P00210_001	EnsemblPlants:GSMUA_Achr1T00210_001	InterPro:IPR037062	UniProt:M0RVS9	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom
InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949
PIRSF:PIRSF000106	PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF32	SMART:SM00919
SMART:SM01274	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI0002952BFF	SEG:seg	:

Description

NAD-dependent malic enzyme 59 kDa isoform, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr1G00210_001]

Coordinates

chr1:+:152042..175769

Molecular Weight (calculated)

66857.9 Da

IEP (calculated)

7.812

GRAVY (calculated)

-0.126

Length

604 amino acids

Sequence
(BLAST)

001: MWNLARAAWN LRQARRLSMS IPGPCIVHKR GTDILHDPWF NKDTGFPLTE RDRLGLRGLL PPRVISFKQQ YERFMNSYRS LEHNTRGASD AVVSLAKWRI
101: LNRLHDRNET LYYRVLIDNI KEFAPIVYTP TVGLVCQNYG GLYRRPRGMY FSAKDKGEMM SMIYNWPSHQ VDMIVVTDGS RILGLGDLGV QGIGIPIGKL
201: DIYVAAAGIN PQKILPVMLD MGTNNQKLLE DNLYLGLRQP RLEGDEYLSI VDEFMEAAFA RWPKAVIQFE DFQMKWAFET LQRYRQRFCM FNDDIQGTAG
301: VALAGLLGAV RSQGRPLKDF VKQKIVVVGA GSAGIGVLNM AKKAISRMCG SSGNVEANQF WLLDKNGLIT KYRKDIDPAA APFARGYGPE EAEGLTEGAS
401: LLEVVKKVKP HVLLGLSGVG GIFNEEVLRA MQDSDASRPA IFAMSNPTMN AECTPKDAFK YSGDNIIFAS GSPFDNVDLG NGKVGYVNQA NNMYLFPGIG
501: LGALLSGAHI ISDGMLQAAS ECLASYITDE DIQQGVIFPS ISSIRHITMQ VGAAVVCTAV AEGLAEGHGK VDLKELSHMS KEETVEYVAR NMWYPVYSPL
601: VQEK

Best Arabidopsis Sequence Match ( AT4G00570.1 )
(BLAST)

001: MMWKNIAGLS KAAAAARTHG SRRCFSTAIP GPCIVHKRGA DILHDPWFNK DTGFPLTERD RLGIRGLLPP RVMTCVQQCD RFIESFRSLE NNTKGEPENV
101: VALAKWRMLN RLHDRNETLY YRVLIDNIKD FAPIIYTPTV GLVCQNYSGL YRRPRGMYFS AKDKGEMMSM IYNWPAPQVD MIVITDGSRI LGLGDLGVQG
201: IGIPIGKLDM YVAAAGINPQ RVLPIMLDVG TNNEKLLQND LYLGVRQPRL EGEEYLEIID EFMEAAFTRW PKAVVQFEDF QAKWAFGTLE RYRKKFCMFN
301: DDVQGTAGVA LAGLLGTVRA QGRPISDFVN QKIVVVGAGS AGLGVTKMAV QAVARMAGIS ESEATKNFYL IDKDGLVTTE RTKLDPGAVL FAKNPAEIRE
401: GASIVEVVKK VRPHVLLGLS GVGGIFNEEV LKAMRESDSC KPAIFAMSNP TLNAECTAAD AFKHAGGNIV FASGSPFENV ELENGKVGHV NQANNMYLFP
501: GIGLGTLLSG ARIVTDGMLQ AASECLASYM TDEEVQKGIL YPSINNIRHI TAEVGAAVLR AAVTDDIAEG HGDVGPKDLS HMSKEDTVNY ITRNMWFPVY
601: SPLVHEK

Arabidopsis Description

NAD-ME2NAD-dependent malic enzyme 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L7K9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.