Factsheet for TraesCS1D01G164800.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, unclear

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, unclear
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G292000.1
TraesCS7B01G183000.7
TraesCS7D01G288000.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00570.1	TraesCS7A01G292000.1	AT2G18876.1	21798944
AT4G00570.1	TraesCS7B01G183000.7	AT2G18876.1	21798944
AT4G00570.1	TraesCS7D01G288000.2	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G190400.5	Wheat	mitochondrion	96.76	97.23
Os10t0503500-01	Rice	mitochondrion	90.92	90.48
KXG38219	Sorghum	mitochondrion	90.6	90.45
HORVU1Hr1G045720.1	Barley	plastid	99.19	84.18
Zm00001d013911_P001	Maize	mitochondrion	86.06	82.97
GSMUA_Achr1P00210_001	Banana	mitochondrion	77.15	78.81
VIT_15s0046g03670.t01	Wine grape	mitochondrion	76.66	78.18
Solyc01g094200.2.1	Tomato	plastid	74.72	76.71
Bra037347.1-P	Field mustard	mitochondrion	72.45	76.15
KRH00689	Soybean	mitochondrion	73.91	76.0
KRH48207	Soybean	mitochondrion	74.23	75.83
CDY51151	Canola	mitochondrion	74.39	75.62
KRH65116	Soybean	mitochondrion	73.91	75.5
CDY68746	Canola	mitochondrion	73.91	75.37
CDY07209	Canola	mitochondrion	74.39	75.37
CDX74340	Canola	mitochondrion	73.91	75.0
KRH40505	Soybean	mitochondrion	72.77	74.71
AT4G00570.1	Thale cress	mitochondrion	72.77	73.97
Bra000967.1-P	Field mustard	mitochondrion	74.07	73.71
PGSC0003DMT400000066	Potato	mitochondrion	74.88	73.68
TraesCS2D01G234500.3	Wheat	mitochondrion	64.18	63.56
TraesCS1D01G123400.2	Wheat	mitochondrion	38.74	41.71
TraesCS3D01G110700.1	Wheat	plastid	38.9	37.38
TraesCS3D01G285700.2	Wheat	plastid	39.38	36.76
TraesCS3D01G275500.1	Wheat	cytosol	38.41	34.35

Protein Annotations

MapMan:2.3.9	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287
GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase
InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072
ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF32	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735
SUPFAM:SSF53223	EnsemblPlantsGene:TraesCS1D01G164800	EnsemblPlants:TraesCS1D01G164800.4	SEG:seg	:	:

Description

No Description!

Coordinates

chr1D:-:235673427..235678222

Molecular Weight (calculated)

68039.9 Da

IEP (calculated)

7.092

GRAVY (calculated)

-0.175

Length

617 amino acids

Sequence
(BLAST)

001: MWRHAAARRS AQIRRLLSTS APSAGAGSAV RGPCIVHKRG TDILHDPWYN KDTAFPLTER DRLGLRGLLP PRVMSFEQQY ERFINSYHSL EHNTQGEPDS
101: VVSLAKWRIL NRLHDRNETL YYRVLIDNIK DFAPIIYTPT VGLVCENYSG LFRRPRGMYF SAKDKGEMMS MIYNWPAEKV DMIVVTDGSR ILGLGDLGVQ
201: GIGIPIGKLD VYVAAAGINP QKVLPIMLDV GTNNEELLED KLYLGLRQPR LEGEEYLAVV DEFMEAVHAR WPKAIVQFED FQMKWAFETL QRYRSRFCMF
301: NDDVQGTAGV ALAGLLGAVR AQGRPLADFT KQKIVVVGAG SAGIGVLNMA KHAMLRMPGT HKIGELGEGH NQFWVLDKDG LITKSRKDLD PAVARFARGY
401: GPEEVEDLHE GASLVEVVKK VKPHVLLGLS GVGGIFNEEV LKAMKESDSP CPAIFAMSNP TTKAECTPED VFKHVGENAV FASGSPFSNV TLSNGRKGYA
501: NQANNMYLFP GIGLGALLSG ARHISDGMLH AAAECLASYI TDDAIRKGIL FPSISSIRHI TARVGAAVAR AAVDEDLAEG CPDLDPRDLR SMSESDTVDY
601: VARKMWYPVY SPLVNDK

Best Arabidopsis Sequence Match ( AT4G00570.1 )
(BLAST)

001: MMWKNIAGLS KAAAAARTHG SRRCFSTAIP GPCIVHKRGA DILHDPWFNK DTGFPLTERD RLGIRGLLPP RVMTCVQQCD RFIESFRSLE NNTKGEPENV
101: VALAKWRMLN RLHDRNETLY YRVLIDNIKD FAPIIYTPTV GLVCQNYSGL YRRPRGMYFS AKDKGEMMSM IYNWPAPQVD MIVITDGSRI LGLGDLGVQG
201: IGIPIGKLDM YVAAAGINPQ RVLPIMLDVG TNNEKLLQND LYLGVRQPRL EGEEYLEIID EFMEAAFTRW PKAVVQFEDF QAKWAFGTLE RYRKKFCMFN
301: DDVQGTAGVA LAGLLGTVRA QGRPISDFVN QKIVVVGAGS AGLGVTKMAV QAVARMAGIS ESEATKNFYL IDKDGLVTTE RTKLDPGAVL FAKNPAEIRE
401: GASIVEVVKK VRPHVLLGLS GVGGIFNEEV LKAMRESDSC KPAIFAMSNP TLNAECTAAD AFKHAGGNIV FASGSPFENV ELENGKVGHV NQANNMYLFP
501: GIGLGTLLSG ARIVTDGMLQ AASECLASYM TDEEVQKGIL YPSINNIRHI TAEVGAAVLR AAVTDDIAEG HGDVGPKDLS HMSKEDTVNY ITRNMWFPVY
601: SPLVHEK

Arabidopsis Description

NAD-ME2NAD-dependent malic enzyme 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L7K9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.