CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY30300
CDY52581
CDY52582

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00570.1	CDY30300	AT2G18876.1	21798944
AT4G00570.1	CDY52581	AT2G18876.1	21798944
AT4G00570.1	CDY52582	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037347.1-P	Field mustard	mitochondrion	96.38	99.66
CDY07209	Canola	mitochondrion	99.18	98.85
CDY68746	Canola	mitochondrion	97.2	97.52
CDX74340	Canola	mitochondrion	97.2	97.04
AT4G00570.1	Thale cress	mitochondrion	92.26	92.26
VIT_15s0046g03670.t01	Wine grape	mitochondrion	84.02	84.3
KRH48207	Soybean	mitochondrion	82.21	82.62
KRH65116	Soybean	mitochondrion	81.71	82.12
KRH00689	Soybean	mitochondrion	80.07	81.0
Solyc01g094200.2.1	Tomato	plastid	79.57	80.37
KRH40505	Soybean	mitochondrion	79.57	80.37
CDY33808	Canola	endoplasmic reticulum, extracellular	4.61	80.0
PGSC0003DMT400000066	Potato	mitochondrion	79.57	77.03
GSMUA_Achr1P00210_001	Banana	mitochondrion	75.29	75.66
KXG38219	Sorghum	mitochondrion	76.28	74.92
TraesCS1D01G164800.4	Wheat	mitochondrion, unclear	75.62	74.39
Os10t0503500-01	Rice	mitochondrion	75.95	74.35
TraesCS1B01G190400.5	Wheat	mitochondrion	73.31	72.48
Zm00001d013911_P001	Maize	mitochondrion	72.65	68.91
HORVU1Hr1G045720.1	Barley	plastid	75.95	63.41
CDY37211	Canola	mitochondrion	62.11	61.0
CDX81448	Canola	mitochondrion	62.11	61.0
CDY35901	Canola	cytosol	37.73	39.35
CDX78432	Canola	cytosol	37.89	39.12
CDX70409	Canola	cytosol	37.89	39.12
CDX88203	Canola	cytosol	37.4	38.61
CDX80544	Canola	cytosol	37.4	38.61
CDY61446	Canola	cytosol	37.23	38.44
CDX91199	Canola	cytosol	37.23	38.44
CDX82748	Canola	cytosol	35.42	36.88
CDX68115	Canola	plastid	37.23	34.61
CDX85926	Canola	plastid	34.93	33.81
CDY02046	Canola	mitochondrion	30.15	32.74

Protein Annotations

MapMan:2.3.9	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	GO:A0A078IMD0	UniProt:A0A078IMD0	EnsemblPlants:CDY51151
ProteinID:CDY51151	ProteinID:CDY51151.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470
GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872
GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00098337001	InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom
InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949
PIRSF:PIRSF000106	PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF32	SMART:SM00919
SMART:SM01274	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI0004EE3406	SEG:seg	:

Description

BnaA09g51860DMalic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A078IMD0]

Coordinates

chrLK032970:+:42067..46210

Molecular Weight (calculated)

66863.6 Da

IEP (calculated)

7.135

GRAVY (calculated)

-0.088

Length

607 amino acids

Sequence
(BLAST)

001: MWRNIAGFSK AAAAAARTHG SRRYLSSAIP GPCIVHKRGA DILHDPWFNK DTGFPLTERD RLGLRGLLPP RVISFEQQYA RFIESFRSLE RNTQGQPDNV
101: VSLAKWRILN RLHDRNETLY YRVLIDNIKD FAPIIYTPTV GLVCQNYSGL YRRPRGMYFS AKDKGEMMSM IYNWPAHQVD MIVITDGSRI LGLGDLGVQG
201: IGIPIGKLDM YVASAGINPQ RVLPIMLDVG TNNQKLLQNP LYLGLRQPRL EGEEYLEIVD EFMEAAFTRW PKAVVQFEDF QAKWAFETLD RYRKKFCMFN
301: DDVQGTAGVA LAGLLGTVRA QGRPLSDFVN QKIVVVGAGS AGLGVTKTAV QAVARMAGIS FAEATKNFYL IDKDGLVTTE RSKLDPAVVP FAKNPAEIRE
401: GASIVEVVKT VRPHVLLGLS GVGGIFNEEV LKAMRESDSC KPAIFAMSNP TLNAECTAAD AFKHAGENIV FGSGSPFENV QLENGSVGHV NQANNMYLFP
501: GIGLGTLLSG ARIVTDGMLL AAAECLASYM TDEEVQKGIL YPSINNIRHI TAEVGAAVLR AAVTDDIVEG HGDVGPRDLS HMSKEETVDY ITRNMWFPIY
601: SPLVHEK

Best Arabidopsis Sequence Match ( AT4G00570.1 )
(BLAST)

001: MMWKNIAGLS KAAAAARTHG SRRCFSTAIP GPCIVHKRGA DILHDPWFNK DTGFPLTERD RLGIRGLLPP RVMTCVQQCD RFIESFRSLE NNTKGEPENV
101: VALAKWRMLN RLHDRNETLY YRVLIDNIKD FAPIIYTPTV GLVCQNYSGL YRRPRGMYFS AKDKGEMMSM IYNWPAPQVD MIVITDGSRI LGLGDLGVQG
201: IGIPIGKLDM YVAAAGINPQ RVLPIMLDVG TNNEKLLQND LYLGVRQPRL EGEEYLEIID EFMEAAFTRW PKAVVQFEDF QAKWAFGTLE RYRKKFCMFN
301: DDVQGTAGVA LAGLLGTVRA QGRPISDFVN QKIVVVGAGS AGLGVTKMAV QAVARMAGIS ESEATKNFYL IDKDGLVTTE RTKLDPGAVL FAKNPAEIRE
401: GASIVEVVKK VRPHVLLGLS GVGGIFNEEV LKAMRESDSC KPAIFAMSNP TLNAECTAAD AFKHAGGNIV FASGSPFENV ELENGKVGHV NQANNMYLFP
501: GIGLGTLLSG ARIVTDGMLQ AASECLASYM TDEEVQKGIL YPSINNIRHI TAEVGAAVLR AAVTDDIAEG HGDVGPKDLS HMSKEDTVNY ITRNMWFPVY
601: SPLVHEK

Arabidopsis Description

NAD-ME2NAD-dependent malic enzyme 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L7K9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.