Factsheet for VIT_15s0021g00500.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66385	Soybean	mitochondrion	85.92	86.33
Solyc08g013860.2.1	Tomato	plastid	85.44	85.3
CDX81448	Canola	mitochondrion	83.84	84.79
CDY37211	Canola	mitochondrion	83.84	84.79
Bra037210.1-P	Field mustard	mitochondrion	83.52	84.47
GSMUA_Achr7P06830_001	Banana	mitochondrion	83.84	83.44
AT2G13560.1	Thale cress	mitochondrion	82.24	82.5
Zm00001d021546_P003	Maize	mitochondrion	80.32	81.1
TraesCS2D01G234500.3	Wheat	mitochondrion	80.48	80.74
TraesCS2A01G237000.1	Wheat	mitochondrion	80.32	80.58
TraesCS2B01G256800.1	Wheat	mitochondrion, unclear	80.32	80.58
KXG36268	Sorghum	mitochondrion	80.0	80.39
Os07t0496200-01	Rice	mitochondrion	79.68	80.06
HORVU2Hr1G050980.2	Barley	mitochondrion, plastid	80.8	76.86
VIT_15s0046g03670.t01	Wine grape	mitochondrion	64.0	66.12
VIT_04s0008g00180.t01	Wine grape	cytosol	38.56	41.2
VIT_11s0016g03210.t01	Wine grape	cytosol	38.88	41.12
VIT_09s0002g03620.t01	Wine grape	cytosol	39.36	38.44
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	24.48	35.42
VIT_16s0039g00580.t01	Wine grape	cytosol	2.88	35.29
VIT_16s0039g01050.t01	Wine grape	cytosol	3.36	33.33
VIT_00s0342g00030.t01	Wine grape	cytosol	3.2	32.26
VIT_00s0183g00140.t01	Wine grape	cytosol	3.84	30.77
VIT_03s0038g00040.t01	Wine grape	extracellular	3.04	26.39
VIT_16s0039g00360.t01	Wine grape	extracellular	3.04	26.39
VIT_00s0279g00080.t01	Wine grape	cytosol	5.6	24.48
VIT_16s0115g00440.t01	Wine grape	cytosol	5.44	23.78
VIT_15s0045g00190.t01	Wine grape	extracellular	2.72	23.61

Protein Annotations

EntrezGene:100261633	wikigene:100261633	MapMan:2.3.9	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	ProteinID:CBI16729
ProteinID:CBI16729.3	UniProt:D7SM51	EMBL:FN594952	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006090	GO:GO:0006108
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009507	GO:GO:0009536
GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0016491	GO:GO:0042803	GO:GO:0046872
GO:GO:0050897	GO:GO:0051287	GO:GO:0055114	InterPro:IPR037062	EntrezGene:LOC100261633	wikigene:LOC100261633
InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406
PANTHER:PTHR23406:SF53	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI00015C9450
ArrayExpress:VIT_15s0021g00500	EnsemblPlantsGene:VIT_15s0021g00500	EnsemblPlants:VIT_15s0021g00500.t01	RefSeq:XP_002265765	RefSeq:XP_002265765.1	SEG:seg

Description

Malic enzyme [Source:UniProtKB/TrEMBL;Acc:D7SM51]

Coordinates

chr15:-:10070662..10119433

Molecular Weight (calculated)

69345.5 Da

IEP (calculated)

5.345

GRAVY (calculated)

-0.168

Length

625 amino acids

Sequence
(BLAST)

001: MSNFCRQIKL PSSLIRRLKH RSSNSMLSGR RSFTTTEGHR PSLVHKRSLD ILHDPWFNKG TAFSMTERDR LDLRGLLPPT VMSPEMQIER FMVDLKRLEV
101: NARDGPSDPY ALAKWRILNR LHDRNETMYY KVLINNIEEY APIVYTPTVG LVCQNYSGLF RRPRGMYFSA ADRGEMMSMV YNWPAEQVDM IVVTDGSRIL
201: GLGDLGVQGI GIAIGKLDLY VAAAGINPQR VLPVMIDVGT NNEKLLKDPL YLGLQEHRLD GDEYLAVIDE FMEAVFTRWP HVIVQFEDFQ SKWAFKLLQR
301: YRSTYRMFND DVQGTAGVAI AGLLGAVRAQ GKPMIDFPKQ KIVVAGAGSA GIGVVNAARK TMARMLGNNE SAFDSAGSQF WVVDAEGLIT EARDNIDPDA
401: LPFARKVKEI DRQGLREGAS LAEVVKQVKP DVLLGLSAVG GLFSKEVLEA LKDSTSTRPA IFAMSNPTKN AECTPEEAFS IVGDNVIFAS GSPFKDVDLG
501: NGHIGHCNQG NNMYLFPGIG LGTLLSGSRI ISDGMLQAAA ECLAAYMTEE EVLKGMIYPS ISSIRDITKE VAAAVVREAI EEDLAEGYRG IDARELCKLN
601: QEELATFVED NMWDPDYPTL VYKQD

Best Arabidopsis Sequence Match ( AT2G13560.1 )
(BLAST)

001: MGIANKLRLS SSSLSRILHR RILYSSAVRS FTTSEGHRPT IVHKQGLDIL HDPWFNKGTA FTMTERNRLD LRGLLPPNVM DSEQQIFRFM TDLKRLEEQA
101: RDGPSDPNAL AKWRILNRLH DRNETMYYKV LINNIEEYAP IVYTPTVGLV CQNYSGLFRR PRGMYFSAED RGEMMSMVYN WPAEQVDMIV VTDGSRILGL
201: GDLGVHGIGI AVGKLDLYVA AAGINPQRVL PVMIDVGTNN EKLRNDPMYL GLQQRRLEDD DYIDVIDEFM EAVYTRWPHV IVQFEDFQSK WAFKLLQRYR
301: CTYRMFNDDV QGTAGVAIAG LLGAVRAQGR PMIDFPKMKI VVAGAGSAGI GVLNAARKTM ARMLGNTETA FDSAQSQFWV VDAQGLITEG RENIDPEAQP
401: FARKTKEMER QGLKEGATLV EVVREVKPDV LLGLSAVGGL FSKEVLEAMK GSTSTRPAIF AMSNPTKNAE CTPQDAFSIL GENMIFASGS PFKNVEFGNG
501: HVGHCNQGNN MYLFPGIGLG TLLSGAPIVS DGMLQAASEC LAAYMSEEEV LEGIIYPPIS RIRDITKRIA AAVIKEAIEE DLVEGYREMD AREIQKLDEE
601: GLMEYVENNM WNPEYPTLVY KDD

Arabidopsis Description

NAD-ME1NAD-dependent malic enzyme 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SIU0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.