CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g00500.t01	Wine grape	mitochondrion	86.33	85.92
Bra037210.1-P	Field mustard	mitochondrion	84.89	85.44
CDX81448	Canola	mitochondrion	84.89	85.44
CDY37211	Canola	mitochondrion	84.89	85.44
AT2G13560.1	Thale cress	mitochondrion	83.92	83.79
Solyc08g013860.2.1	Tomato	plastid	84.08	83.55
GSMUA_Achr7P06830_001	Banana	mitochondrion	82.8	82.01
Os07t0496200-01	Rice	mitochondrion	81.19	81.19
Zm00001d021546_P003	Maize	mitochondrion	80.55	80.94
KXG36268	Sorghum	mitochondrion	80.71	80.71
TraesCS2B01G256800.1	Wheat	mitochondrion, unclear	80.55	80.42
TraesCS2D01G234500.3	Wheat	mitochondrion	80.39	80.26
TraesCS2A01G237000.1	Wheat	mitochondrion	80.06	79.94
HORVU2Hr1G050980.2	Barley	mitochondrion, plastid	80.87	76.56
KRH48207	Soybean	mitochondrion	64.47	66.39
KRH65116	Soybean	mitochondrion	64.31	66.23
KRH00689	Soybean	mitochondrion	63.83	66.17
KRH40505	Soybean	mitochondrion	63.67	65.89
KRH74263	Soybean	cytosol	38.42	40.44
KRH07269	Soybean	cytosol	38.26	40.27
KRH52781	Soybean	mitochondrion	38.26	38.45
KRH60218	Soybean	mitochondrion	39.07	38.39
KRH62099	Soybean	mitochondrion	38.26	38.26
KRH41507	Soybean	cytosol, peroxisome, plastid	33.76	37.43
KRH09931	Soybean	mitochondrion, plastid	37.94	36.7
KRH44278	Soybean	plastid	37.14	36.04
KRH23402	Soybean	nucleus	37.46	36.01
KRH47214	Soybean	mitochondrion	28.78	31.13
KRH13473	Soybean	plastid	5.95	30.08
KRH12915	Soybean	cytosol	4.98	27.93
KRH01213	Soybean	cytosol, plastid	8.52	18.66

Protein Annotations

EntrezGene:100799344	MapMan:2.3.9	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	EMBL:ACUP02001951	EnsemblPlantsGene:GLYMA_03G102900
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006090	GO:GO:0006108	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987
GO:GO:0016491	GO:GO:0042803	GO:GO:0046872	GO:GO:0050897	GO:GO:0051287	GO:GO:0055114
UniProt:I1JMI9	InterPro:IPR037062	EnsemblPlants:KRH66385	ProteinID:KRH66385	ProteinID:KRH66385.1	InterPro:Malic_NAD-bd
InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390
PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF53
SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI00023375A0	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:29563789..29582624

Molecular Weight (calculated)

68987.2 Da

IEP (calculated)

5.866

GRAVY (calculated)

-0.150

Length

622 amino acids

Sequence
(BLAST)

001: MAMLLKHVRN SSSLLKRHVT AAHLLLSRPF TTTEGHRPSI VHKRSLDILH DPWFNKGTAF SMTERDRLDL RGLLPPNVMS PDLQIERFMV DLKRLEVQAR
101: DGPSDPNALA KWRILNRLHD RNETMYYKVL IAKIEEYAPI VYTPTVGLVC QNYSGLFRRP RGMYFSAEDR GEMMSMVYNW PAEQVDMIVV TDGSRILGLG
201: DLGVQGIGIA IGKLDLYVAA AGINPQRVLP VMIDVGTNNE KLLEDPLYLG LQQHRLDGDD YLAVVDEFME AVFTRWPNVI VQFEDFQSKW AFKLLQRYRN
301: TYRMFNDDVQ GTAGVAIAGL LGAVRAQGRP LIDFPKQKIV VAGAGSAGIG VLNAARKTMA RMLGNNEVAF ESAKSQFWVV DAQGLITEGR ENIDPDALPF
401: ARNLKEMDRQ GLREGASLVE VVKQVKPDVL LGLSAVGGLF SKEVLEALKG STSTRPAIFA MSNPTKNAEC TAEEAFSILG DNIIFASGSP FSNVDLGNGH
501: IGHCNQGNNM YLFPGIGLGT LLSGARIVSD GMLQAAAERL ATYMSEEEVL KGIIFPSTSR IRDITKQVAT AVIKEAVEED LAEGYHGMDA RELQKLSEDE
601: IAEYVQNNMW SPEYPTLVYK KE

Best Arabidopsis Sequence Match ( AT2G13560.1 )
(BLAST)

001: MGIANKLRLS SSSLSRILHR RILYSSAVRS FTTSEGHRPT IVHKQGLDIL HDPWFNKGTA FTMTERNRLD LRGLLPPNVM DSEQQIFRFM TDLKRLEEQA
101: RDGPSDPNAL AKWRILNRLH DRNETMYYKV LINNIEEYAP IVYTPTVGLV CQNYSGLFRR PRGMYFSAED RGEMMSMVYN WPAEQVDMIV VTDGSRILGL
201: GDLGVHGIGI AVGKLDLYVA AAGINPQRVL PVMIDVGTNN EKLRNDPMYL GLQQRRLEDD DYIDVIDEFM EAVYTRWPHV IVQFEDFQSK WAFKLLQRYR
301: CTYRMFNDDV QGTAGVAIAG LLGAVRAQGR PMIDFPKMKI VVAGAGSAGI GVLNAARKTM ARMLGNTETA FDSAQSQFWV VDAQGLITEG RENIDPEAQP
401: FARKTKEMER QGLKEGATLV EVVREVKPDV LLGLSAVGGL FSKEVLEAMK GSTSTRPAIF AMSNPTKNAE CTPQDAFSIL GENMIFASGS PFKNVEFGNG
501: HVGHCNQGNN MYLFPGIGLG TLLSGAPIVS DGMLQAASEC LAAYMSEEEV LEGIIYPPIS RIRDITKRIA AAVIKEAIEE DLVEGYREMD AREIQKLDEE
601: GLMEYVENNM WNPEYPTLVY KDD

Arabidopsis Description

NAD-ME1NAD-dependent malic enzyme 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SIU0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.