CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74263	Soybean	cytosol	85.62	91.71
KRH07269	Soybean	cytosol	85.47	91.54
KRH41507	Soybean	cytosol, peroxisome, plastid	78.36	88.41
KRH12915	Soybean	cytosol	15.17	86.49
VIT_11s0016g03210.t01	Wine grape	cytosol	80.73	86.46
GSMUA_AchrUn_...	Banana	cytosol	80.25	86.1
GSMUA_Achr7P13690_001	Banana	cytosol	76.15	83.83
AT2G19900.1	Thale cress	cytosol	74.72	81.41
Bra039029.1-P	Field mustard	cytosol	73.93	80.41
CDY35901	Canola	cytosol	73.3	79.73
Zm00001d012764_P001	Maize	cytosol	61.93	78.87
KRH52781	Soybean	mitochondrion	77.09	78.84
KRH62099	Soybean	mitochondrion	77.25	78.62
Os01t0743500-01	Rice	plasma membrane, plastid	71.72	77.61
EES01460	Sorghum	cytosol	71.41	76.22
TraesCS3A01G275600.2	Wheat	cytosol, peroxisome, plastid	67.77	75.53
KRH09931	Soybean	mitochondrion, plastid	76.46	75.27
CDX82748	Canola	cytosol	69.04	74.96
GSMUA_Achr10P...	Banana	plastid	77.88	74.81
KRH23402	Soybean	nucleus	76.3	74.65
GSMUA_Achr3P31710_001	Banana	cytosol	76.3	74.08
KRH44278	Soybean	plastid	74.09	73.17
TraesCS3B01G309300.1	Wheat	mitochondrion	71.56	72.95
HORVU3Hr1G070850.1	Barley	mitochondrion	70.14	71.27
TraesCS3D01G275500.1	Wheat	cytosol	71.56	65.65
KRH47214	Soybean	mitochondrion	54.03	59.48
KRH13473	Soybean	plastid	11.06	56.91
KRH65116	Soybean	mitochondrion	38.07	39.9
KRH48207	Soybean	mitochondrion	37.76	39.57
KRH00689	Soybean	mitochondrion	37.12	39.17
KRH66385	Soybean	mitochondrion	38.39	39.07
KRH40505	Soybean	mitochondrion	36.97	38.94
KRH01213	Soybean	cytosol, plastid	15.96	35.56

Protein Annotations

EntrezGene:100782096	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	EMBL:ACUP02003355	EnsemblPlantsGene:GLYMA_05G227400
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0004473
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006090
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016491	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	UniProt:I1K5Y5	InterPro:IPR037062
EnsemblPlants:KRH60218	ProteinID:KRH60218	ProteinID:KRH60218.1	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf
InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106
PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF26	SMART:SM00919	SMART:SM01274
SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI00023393ED	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:40556860..40562544

Molecular Weight (calculated)

70081.2 Da

IEP (calculated)

7.511

GRAVY (calculated)

-0.239

Length

633 amino acids

Sequence
(BLAST)

001: MGHWCLSNLG FSGCCGTNSS KRKISKDQHY NTGEDKKVIG REMESTLKAL RDGESVLDLS PRSTVSGGVE DIYGEDRATE DQLVTPWIFS VASGYSLLRD
101: PQYNKGLSFT EKERDAHYLR GLLPPTVSTQ QLQEKKLMNS IRQYQVPLQK YVAMMDLQER NERLFYKLLI DNVEELLPVV YTPTVGEACQ KYGSIFRRPQ
201: GLYISLKEKG KILEVLKNWP ERSIQVIVVT DGERILGLGD LGCQGMGIPV GKLALYTALG GVRPSACLPI TIDVGTNNEK LLNDEFYIGL RQRRATGQEY
301: YDLMHEFMTA VKQNYGEKVL VQFEDFANHN AFELLAKYGT THLVFNDDIQ GTASVVLAGV VAALKLIGGT LPEHTFLFLG AGEAGTGIAE LIALEMSKQT
401: KAPIEESRKK IWLVDSKGLI VSSRKNSLQH FKKPWAHEHE PVNSLLEAVK VIKPTVLIGS SGVGRTFTKE VVEAMTSNND KPLILALSNP TSQSECTAEE
501: AYQWSEGRAI FASGSPFDPV EYKGKVYASG QANNAYIFPG FGLGLVISGA IRVHDDMLLA ASESLAKQVS EENYKNGLIY PPFSNIRRIS ANIAANVAAK
601: AYELGLATRL PRPQNLVKCA ESCMYTPVYR NYR

Best Arabidopsis Sequence Match ( AT2G19900.1 )
(BLAST)

001: MEKVTNSDLK SSVDGGVVDV YGEDSATIEH NITPWSLSVS SGYSLLRDPR YNKGLAFTEK ERDTHYLRGL LPPVVLDQKL QEKRLLNNIR QYQFPLQKYM
101: ALTELQERNE RLFYKLLIDN VEELLPIVYT PTVGEACQKF GSIFRRPQGL FISLKDKGKI LDVLKNWPER NIQVIVVTDG ERILGLGDLG CQGMGIPVGK
201: LALYSALGGV RPSACLPVTI DVGTNNEKLL NDEFYIGLRQ KRATGQEYSE LLNEFMSAVK QNYGEKVLIQ FEDFANHNAF ELLAKYSDTH LVFNDDIQGT
301: ASVVLAGLVS AQKLTNSPLA EHTFLFLGAG EAGTGIAELI ALYMSKQMNA SVEESRKKIW LVDSKGLIVN SRKDSLQDFK KPWAHEHEPV KDLLGAIKAI
401: KPTVLIGSSG VGRSFTKEVI EAMSSINERP LIMALSNPTT QSECTAEEAY TWSKGRAIFA SGSPFDPVEY EGKVFVSTQA NNAYIFPGFG LGLVISGAIR
501: VHDDMLLAAA EALAGQVSKE NYEKGMIYPS FSSIRKISAQ IAANVATKAY ELGLAGRLPR PKDIVKCAES SMYSPTYRLY R

Arabidopsis Description

NADP-ME1NADP-dependent malic enzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:O82191]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.