CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99623
KRH07269
KRH07429
KRH12915
KRH41507
KRH46625
KRH60218
KRH66142
KRH74263

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79750.1	KRH07269	AT2G19900.1	21798944
AT1G79750.1	KRH12915	AT2G19900.1	21798944
AT1G79750.1	KRH41507	AT2G19900.1	21798944
AT1G79750.1	KRH60218	AT2G19900.1	21798944
AT1G79750.1	KRH74263	AT2G19900.1	21798944
AT1G79750.1	KRG99623	AT3G07310.1	21798944
AT1G79750.1	KRH07429	AT3G07310.1	21798944
AT1G79750.1	KRH46625	AT3G07310.1	21798944
AT1G79750.1	KRH66142	AT3G07310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g066290.2.1	Tomato	cytosol	17.96	70.83
KRH13473	Soybean	plastid	28.87	66.67
KRH23402	Soybean	nucleus	43.66	19.17
KRH09931	Soybean	mitochondrion, plastid	43.31	19.13
KRH47214	Soybean	mitochondrion	37.32	18.43
KRH44278	Soybean	plastid	39.44	17.47
KRH52781	Soybean	mitochondrion	38.03	17.45
KRH62099	Soybean	mitochondrion	38.03	17.36
KRH07269	Soybean	cytosol	35.56	17.09
PGSC0003DMT400068027	Potato	plastid	38.38	17.03
KRH74263	Soybean	cytosol	34.86	16.75
VIT_09s0002g03620.t01	Wine grape	cytosol	37.32	16.56
PGSC0003DMT400006726	Potato	plastid	37.32	16.51
CDX85926	Canola	plastid	36.27	16.43
Bra003738.1-P	Field mustard	plastid	36.27	16.22
KRH60218	Soybean	mitochondrion	35.56	15.96
AT1G79750.1	Thale cress	plastid	36.27	15.94
CDX68115	Canola	plastid	36.27	15.77
KRH41507	Soybean	cytosol, peroxisome, plastid	26.06	13.19
KRH65116	Soybean	mitochondrion	18.66	8.77
KRH66385	Soybean	mitochondrion	18.66	8.52
KRH48207	Soybean	mitochondrion	17.96	8.44
KRH40505	Soybean	mitochondrion	17.25	8.15
KRH00689	Soybean	mitochondrion	16.9	8.0
KRH12915	Soybean	cytosol	0.0	0.0

Protein Annotations

EMBL:ACUP02011507	EnsemblPlants:KRH01213	EnsemblPlantsGene:GLYMA_18G2618002	Gene3D:3.40.50.720	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0051287	InterPro:Malic_NAD-bd	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR23406	PANTHER:PTHR23406:SF36
PFAM:PF03949	ProteinID:KRH01213	ProteinID:KRH01213.1	SMART:SM00919	SUPFAM:SSF51735	UniParc:UPI0006EDC128
UniProt:A0A0R0F4H2	MapMan:23.5.1.1.3.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:54766457..54769666

Molecular Weight (calculated)

30991.2 Da

IEP (calculated)

8.035

GRAVY (calculated)

-0.042

Length

284 amino acids

Sequence
(BLAST)

001: GSAIFASGSP FSPVEYEGKV FVPGQANNAY IFPGFGLGLI MSGTIRVHDD LLLAASEALV AQVSQENFDK GLIYPPFTNI RKISAHIAAN VAAKAYELGL
101: ATRLPQPKDL VKFAESCMYT PAYRSYRKGS TFSIYCCNKV HEMAMVSAVQ EAQKDNLKSF NDYMMKVLEL AFVSSTSQVS SGMPSMEIVP LTGRPIVEKK
201: ASIYAEAALG VGVGNLQRIR AFLRIRLRDY GVLDFDASDA RRSGYYNEAR NVSQSSHQFA PLLTQWINKG GMVPEEIAAA ASEE

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.