Factsheet for PGSC0003DMT400068027

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400022517
PGSC0003DMT400022519
PGSC0003DMT400053202
PGSC0003DMT400084936

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79750.1	PGSC0003DMT400022517	AT3G07310.1	21798944
AT1G79750.1	PGSC0003DMT400022519	AT3G07310.1	21798944
AT1G79750.1	PGSC0003DMT400053202	AT3G07310.1	21798944
AT1G79750.1	PGSC0003DMT400084936	AT3G07310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044600.2.1	Tomato	plastid	99.22	99.22
PGSC0003DMT400006726	Potato	plastid	86.72	86.45
VIT_09s0002g03620.t01	Wine grape	cytosol	80.16	80.16
HORVU5Hr1G053200.1	Barley	endoplasmic reticulum, extracellular	8.12	80.0
PGSC0003DMT400084201	Potato	cytosol	71.88	79.45
PGSC0003DMT400077452	Potato	cytosol	73.28	79.36
AT1G79750.1	Thale cress	plastid	77.81	77.09
KRH09931	Soybean	mitochondrion, plastid	76.25	75.89
PGSC0003DMT400000961	Potato	cytosol	69.06	75.04
KRH23402	Soybean	nucleus	75.47	74.65
CDX85926	Canola	plastid	73.12	74.64
CDX68115	Canola	plastid	75.94	74.43
Bra003738.1-P	Field mustard	plastid	72.97	73.54
KRH44278	Soybean	plastid	73.59	73.48
KRH13473	Soybean	plastid	11.56	60.16
KRH47214	Soybean	mitochondrion	52.5	58.43
PGSC0003DMT400043836	Potato	cytosol	21.72	57.92
PGSC0003DMT400008389	Potato	mitochondrion	21.09	50.94
KRH01213	Soybean	cytosol, plastid	17.03	38.38
PGSC0003DMT400000066	Potato	mitochondrion	36.09	36.84

Protein Annotations

EntrezGene:102598765	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	InterPro:IPR037062	UniProt:M1CIA9
InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00390	PFAM:PF03949	EnsemblPlantsGene:PGSC0003DMG400026456	PGSC:PGSC0003DMG400026456	EnsemblPlants:PGSC0003DMT400068027	PIRSF:PIRSF000106
PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF39	SMART:SM00919	SMART:SM01274
SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI000294C3AF	RefSeq:XP_006359476.1	SEG:seg	:

Description

Malic enzyme [Source:PGSC_GENE;Acc:PGSC0003DMG400026456]

Coordinates

chr12:+:51250600..51258624

Molecular Weight (calculated)

70120.3 Da

IEP (calculated)

6.259

GRAVY (calculated)

-0.075

Length

640 amino acids

Sequence
(BLAST)

001: MFSLNGTSFT NNSLSGVSRC LTQSSRRVSA PMVVVAAVSS NGKPGDGSVS VLVENALTES AAPVEMEVKS TVTGGVQDVY GEDSATEDQS ITPWTLSVAS
101: GFSLLRNPHY NKGLAFSERE RDAHYLRGLL PPVVISHDLQ VKKMMNSIRK YDVPLQRYMA MMDLQEMNER LFYKLLIDNV EELLPIVYTP TVGEACQKYG
201: SIFRRPQGLF ISLKEKGKIH EVLKNWPEKK IQVIVVTDGE RILGLGDLGC QGMGIPVGKL SLYTALGGIR PSACLPVTID VGTNNENLLN DEFYIGLRQR
301: RATGQEYAEL LDEFMYAVKQ NYGEKVLIQF EDFANHNAFD LLAKYGTSHL VFNDDIQGTA SVVLAGLMAA LNLVGGSLSE HTFLFLGAGE AGTGIAELIA
401: LEMSKQTGIP LEETRKKIWM VDSKGLIVKS RMEMLQHFKR PWAHDHEPVQ ELVNAVKSIK PTVLIGSSGA GRTFTKEVVQ AMATFNEKPI IFALSNPTSQ
501: SECTAEEAYS WSEGRAIFAS GSPFAPVEYN GKVYASGQAN NAYIFPGFGL GLIISGAIRV HDDMLLVASE ALAEQVSQEN FEKGLIYPPF SNIRKISAHI
601: AAKVAAKAYE LGLATRLPQP KDLVAYAESC MYSPAYRSYR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.