Factsheet for PGSC0003DMT400022519

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07310.1	PGSC0003DMT400001474	AT5G24660.1	21798944
AT3G07310.1	PGSC0003DMT400001475	AT5G24660.1	21798944
AT3G07310.1	PGSC0003DMT400001476	AT5G24660.1	21798944
AT3G07310.1	PGSC0003DMT400069515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022517	Potato	mitochondrion	63.85	100.0
Solyc09g057580.2.1	Tomato	plastid	46.67	85.45
VIT_00s0360g00020.t01	Wine grape	mitochondrion	37.69	60.0
VIT_00s2037g00010.t01	Wine grape	cytosol	16.15	58.88
PGSC0003DMT400053202	Potato	cytosol	40.51	54.67
PGSC0003DMT400084936	Potato	cytosol	39.74	51.84
AT3G07310.1	Thale cress	plastid	47.69	50.54
Bra029638.1-P	Field mustard	plastid	46.15	48.91
Bra037475.1-P	Field mustard	plastid	42.56	48.82
CDX85350	Canola	plastid	42.56	48.82
CDX86293	Canola	plastid	42.56	48.82
AT5G48590.1	Thale cress	plastid	42.82	48.55
CDY28064	Canola	plastid	45.64	48.24
CDY34905	Canola	plastid	42.05	47.95
Bra040372.1-P	Field mustard	plastid	42.82	47.58
CDY24630	Canola	plastid	45.38	47.2
CDY60823	Canola	plastid	42.05	46.59
KRH07429	Soybean	plastid	46.15	46.39
KRH66142	Soybean	plastid	44.87	44.53
KRH46625	Soybean	plastid	42.56	43.8
KRG99623	Soybean	plastid	40.51	42.47
TraesCS1B01G418600.1	Wheat	mitochondrion	37.18	37.08
TraesCS1A01G390400.1	Wheat	mitochondrion	36.92	36.83
TraesCS1D01G398600.1	Wheat	mitochondrion	36.92	36.83
Zm00001d049232_P002	Maize	mitochondrion	36.41	36.41
Os11t0456100-01	Rice	mitochondrion	35.9	36.27
HORVU1Hr1G086110.1	Barley	plastid	37.95	35.41
PGSC0003DMT400083980	Potato	plastid	30.77	28.5
PGSC0003DMT400024037	Potato	plastid	28.97	28.11

Protein Annotations

EnsemblPlants:PGSC0003DMT400022519	EnsemblPlantsGene:PGSC0003DMG402008726	EntrezGene:102582294	InterPro:At3g17800-like	InterPro:DUF760	ncoils:Coil
PANTHER:PTHR31808	PANTHER:PTHR31808:SF2	PFAM:PF05542	PGSC:PGSC0003DMG402008726	RefSeq:XP_006367000.1	SEG:seg
UniParc:UPI000295C6DF	UniProt:M1AGU9	MapMan:35.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402008726]

Coordinates

chr9:-:31783140..31789495

Molecular Weight (calculated)

44099.4 Da

IEP (calculated)

8.195

GRAVY (calculated)

-0.106

Length

390 amino acids

Sequence
(BLAST)

001: MDCGLSYTKI SLHQSLPLTV KPCLSSSTCF AFNNSSFGTS VGCRRSLFVV ASGSSSSKCE FSGLNAPLEP ATPAGRLLST VLLNDRKYFH VAVQKQLEKL
101: AYERDEAVAR MNLSLGSDEA FLHRRIAEVK ELECQASVED IMYMLISYKF SGIRVHLIPR LSKCMYNGRL EIWPCKDWEL ESIHSCEVLE MVREHLTTVL
201: GWKEKSNVAD NWTPTEVQKF KLCQVYAASV LYGYFLKSAS LRHHLEKKLD HINPYLDIAS YNQLLLSEIR SLGSEIVPFG CIGGTRSTSV GQIPLLREKK
301: QDKLKYYVMS FDPETLQMWA KPKSKEALNL IEKHSYALFG DKKTGLVASD EVILTSLASL KRIVLEAIAF GSFLWDAEEY VRIVYKLKEN

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.