Factsheet for TraesCS1D01G398600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G390400.1	Wheat	mitochondrion	97.7	97.7
TraesCS1B01G418600.1	Wheat	mitochondrion	97.19	97.19
HORVU1Hr1G086110.1	Barley	plastid	90.54	84.69
Os11t0456100-01	Rice	mitochondrion	70.84	71.76
Zm00001d049232_P002	Maize	mitochondrion	68.29	68.46
VIT_00s2037g00010.t01	Wine grape	cytosol	12.79	46.73
VIT_00s0360g00020.t01	Wine grape	mitochondrion	27.62	44.08
PGSC0003DMT400022517	Potato	mitochondrion	26.34	41.37
Bra037475.1-P	Field mustard	plastid	35.04	40.29
CDX86293	Canola	plastid	35.04	40.29
PGSC0003DMT400053202	Potato	cytosol	29.41	39.79
CDY34905	Canola	plastid	34.02	38.89
PGSC0003DMT400084936	Potato	cytosol	29.67	38.8
AT3G07310.1	Thale cress	plastid	36.32	38.59
CDY28064	Canola	plastid	36.32	38.48
CDX85350	Canola	plastid	33.25	38.24
Bra029638.1-P	Field mustard	plastid	35.81	38.04
CDY24630	Canola	plastid	36.32	37.87
Bra040372.1-P	Field mustard	plastid	33.76	37.61
Solyc06g007550.1.1	Tomato	cytosol	26.85	37.37
CDY60823	Canola	plastid	33.5	37.22
KRG99623	Soybean	plastid	35.29	37.1
PGSC0003DMT400022519	Potato	plastid	36.83	36.92
AT5G48590.1	Thale cress	plastid	32.48	36.92
KRH46625	Soybean	plastid	35.55	36.68
KRH07429	Soybean	plastid	35.55	35.82
Solyc09g057580.2.1	Tomato	plastid	19.44	35.68
KRH66142	Soybean	plastid	34.53	34.35
Solyc06g007560.1.1	Tomato	plastid	30.43	32.87
TraesCS4D01G050700.1	Wheat	plastid	28.13	26.83
TraesCS2D01G443500.1	Wheat	plastid	26.34	26.28

Protein Annotations

EnsemblPlants:TraesCS1D01G398600.1	EnsemblPlantsGene:TraesCS1D01G398600	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF2
PFAM:PF05542	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:465537409..465540145

Molecular Weight (calculated)

44369.6 Da

IEP (calculated)

9.317

GRAVY (calculated)

-0.372

Length

391 amino acids

Sequence
(BLAST)

001: MAALRPAPRA AIGDRGPAAV RRGSRRTSYL SSASPCWQQG NILNRKSKCT TRKLLTTVTG AKGAESEFDS VNAPLEPQTW EGSFLCGLLK NQPQIFLVAA
101: AKQLQRLSIQ RKDTLTRWEY SIGSSEDCLH RRIAEMKDQE CRTAIEDVMY MLIVHKYSKI EVPMVPNLSK IISNRRLHIW PPREADLESI HGPEVLGQIK
201: EHLTSIIRWV HRNGPKINRS TLRVKRLQLA RIYSASIMYG YFLKSVAVRH RLDLTFARSE ECLQPIQLLN AQLATTRKKE QQEAFDGSVE TVPSSKPRSV
301: VDPHDLKSYM MGFDPKTLEL CAKLRTNEAC NLIEKHSWAL FGEKMGSTEI DEAVILDPAS LKRLLLEAIA FGSFLWDSED YVDEIYKLQD S

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.