Factsheet for Solyc06g007550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07310.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT3G07310.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT3G07310.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT3G07310.1	Solyc06g072990.1.1	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400084936	Potato	cytosol	78.29	73.58
Solyc06g007560.1.1	Tomato	plastid	62.28	48.34
VIT_00s0360g00020.t01	Wine grape	mitochondrion	33.1	37.96
Solyc09g057580.2.1	Tomato	plastid	28.47	37.56
CDY34905	Canola	plastid	40.21	33.04
AT5G48590.1	Thale cress	plastid	40.21	32.85
CDX86293	Canola	plastid	39.5	32.65
Bra037475.1-P	Field mustard	plastid	39.5	32.65
AT3G07310.1	Thale cress	plastid	42.7	32.61
CDX85350	Canola	plastid	39.15	32.35
Bra040372.1-P	Field mustard	plastid	40.21	32.19
CDY60823	Canola	plastid	39.5	31.53
Bra029638.1-P	Field mustard	plastid	40.57	30.98
CDY28064	Canola	plastid	40.57	30.89
CDY24630	Canola	plastid	40.57	30.4
KRG99623	Soybean	plastid	39.15	29.57
KRH46625	Soybean	plastid	39.5	29.29
VIT_00s2037g00010.t01	Wine grape	cytosol	11.03	28.97
KRH07429	Soybean	plastid	39.86	28.87
KRH66142	Soybean	plastid	39.5	28.24
TraesCS1A01G390400.1	Wheat	mitochondrion	37.37	26.85
TraesCS1D01G398600.1	Wheat	mitochondrion	37.37	26.85
Os11t0456100-01	Rice	mitochondrion	36.65	26.68
TraesCS1B01G418600.1	Wheat	mitochondrion	36.3	26.09
Zm00001d049232_P002	Maize	mitochondrion	35.94	25.9
HORVU1Hr1G086110.1	Barley	plastid	36.3	24.4
Solyc03g098000.2.1	Tomato	plastid	29.18	21.24
Solyc08g076090.2.1	Tomato	nucleus, plastid	26.69	18.66

Protein Annotations

EnsemblPlants:Solyc06g007550.1.1	EnsemblPlantsGene:Solyc06g007550.1	InterPro:At3g17800-like	InterPro:DUF760	ncoils:Coil	PANTHER:PTHR31808
PANTHER:PTHR31808:SF2	PFAM:PF05542	SEG:seg	UniParc:UPI0002766121	UniProt:K4C3D6	MapMan:35.1

Description

No Description!

Coordinates

chr6:-:1558357..1559863

Molecular Weight (calculated)

32802.8 Da

IEP (calculated)

7.992

GRAVY (calculated)

-0.412

Length

281 amino acids

Sequence
(BLAST)

001: MAPPLMPTTE TGRLLSEYLQ NDKALFYEFM EKELENLECM RKEALLRCVY SVETDEVILH RKIYEMKKVE CQKVVEDVMY MFIVYKFSEI GVHLVPKLSN
101: CMCNGRLEIS PCKNLELESI HSDEVLAMVK EIRWEHKNKS NVKDNLGVTQ IKKDYIRYVY GSSMLYGYFL KSASLRYHLE KSFDTTNSNN LSFSSSCHLK
201: QKSVPIEGKK YDNLKSYVEK FDNQTMKMCR KPKFNVTMSL MEKHYSALFG DENQHEEVST SFTSLKRFVL EAVPLGGRIS L

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.