CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80461
CDY05402
CDY05452
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07310.1	CDX80461	AT5G24660.1	21798944
AT3G07310.1	CDY05402	AT5G24660.1	21798944
AT3G07310.1	CDY05452	AT5G24660.1	21798944
AT3G07310.1	CDY69515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28064	Canola	plastid	93.6	95.12
Bra029638.1-P	Field mustard	plastid	93.33	95.11
AT3G07310.1	Thale cress	plastid	81.33	82.88
CDY34905	Canola	plastid	70.4	77.19
CDY60823	Canola	plastid	71.47	76.14
CDX86293	Canola	plastid	60.8	67.06
CDX85350	Canola	plastid	59.2	65.29
VIT_00s0360g00020.t01	Wine grape	mitochondrion	33.6	51.43
VIT_00s2037g00010.t01	Wine grape	cytosol	14.13	49.53
PGSC0003DMT400022517	Potato	mitochondrion	32.8	49.4
Solyc09g057580.2.1	Tomato	plastid	26.13	46.01
KRG99623	Soybean	plastid	45.07	45.43
PGSC0003DMT400022519	Potato	plastid	47.2	45.38
KRH07429	Soybean	plastid	46.67	45.1
KRH46625	Soybean	plastid	45.33	44.85
PGSC0003DMT400053202	Potato	cytosol	33.87	43.94
KRH66142	Soybean	plastid	45.87	43.77
PGSC0003DMT400084936	Potato	cytosol	34.13	42.81
Solyc06g007550.1.1	Tomato	cytosol	30.4	40.57
Solyc06g007560.1.1	Tomato	plastid	36.27	37.57
Os11t0456100-01	Rice	mitochondrion	38.67	37.56
TraesCS1B01G418600.1	Wheat	mitochondrion	38.13	36.57
TraesCS1A01G390400.1	Wheat	mitochondrion	38.13	36.57
TraesCS1D01G398600.1	Wheat	mitochondrion	37.87	36.32
Zm00001d049232_P002	Maize	mitochondrion	37.6	36.15
HORVU1Hr1G086110.1	Barley	plastid	38.67	34.69
CDX82345	Canola	plastid	30.93	28.57
CDY23684	Canola	plastid	30.67	28.26
CDX92162	Canola	plastid	31.2	28.19
CDX95820	Canola	plastid	30.93	27.95
CDX75937	Canola	plastid	30.13	27.29
CDY58279	Canola	plastid	30.67	27.06
CDY29940	Canola	plastid	28.53	26.68
CDY35549	Canola	plastid	28.0	26.12
CDY19857	Canola	nucleus	6.13	22.12

Protein Annotations

EnsemblPlants:CDY24630	EnsemblPlantsGene:GSBRNA2T00027001001	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF2
PFAM:PF05542	ProteinID:CDY24630	ProteinID:CDY24630.1	SEG:seg	UniParc:UPI0004EE9696	UniProt:A0A078GDP3
MapMan:35.1	:	:	:	:	:

Description

BnaA05g30290DBnaA05g30290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDP3]

Coordinates

chrLK032162:+:14044..15953

Molecular Weight (calculated)

41785.9 Da

IEP (calculated)

8.138

GRAVY (calculated)

-0.270

Length

375 amino acids

Sequence
(BLAST)

001: MDTCLSNQAA LSFLPSRLRR QSGDGGGGGG GGGGVFSLPA MRKVQYRSMV VVATAGQSRC EPGSSLNAPL ELRSSQGRFL RSVLLNKRQL FHYAAADELK
101: QLAEEREAAL ARMALSSGSD EATLHRRIAN LKERYCKTAV QDIMYMLIFY KYSEIRVPLA PKLSRCIYNG RLEIWPTKDW ELESIHTCDA LELIKEHVCA
201: VIGLRVNACV TDNWATTQIQ KLHLRNVYDA SILYGYFLKS ASLRHQLECS LSDLHGSGYL KGPVFGSSFT TGAAQISSAK EQLRHYITGF DAETLRRCAR
301: PRTEEARNLI EKQSLALFGA EESDETIVTS YASLKRLVLE AVAFGTFLWD TELYVEGTYK LKENGNAEEQ ENRSI

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.