CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79923
CDY22534
CDY23835
CDY35405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48450.1	CDX79923	AT2G41680.1	21798944
AT1G48450.1	CDY22534	AT2G41680.1	21798944
AT1G48450.1	CDY23835	AT2G41680.1	21798944
AT1G48450.1	CDY35405	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23684	Canola	plastid	87.53	91.4
AT1G48450.1	Thale cress	plastid	80.0	80.38
CDX95820	Canola	plastid	67.29	68.92
CDX92162	Canola	plastid	65.65	67.23
CDX75937	Canola	plastid	64.0	65.7
CDX82345	Canola	plastid	62.59	65.52
CDY19857	Canola	nucleus	16.0	65.38
Solyc03g098000.2.1	Tomato	plastid	56.47	62.18
VIT_17s0119g00070.t01	Wine grape	plastid	60.0	60.86
GSMUA_Achr1P22120_001	Banana	plastid	54.59	60.42
PGSC0003DMT400083980	Potato	plastid	59.06	59.62
KRH60570	Soybean	plastid	56.0	59.5
KRH48705	Soybean	plastid	56.24	58.58
KRH41876	Soybean	plastid	55.29	58.17
KXG37708	Sorghum	plastid	56.47	57.83
KRH39016	Soybean	plastid	56.0	57.49
GSMUA_Achr8P30820_001	Banana	mitochondrion	56.0	57.21
Zm00001d013411_P002	Maize	plastid	54.12	55.29
HORVU4Hr1G008300.1	Barley	plastid	52.71	54.9
Zm00001d033787_P001	Maize	plastid	54.59	54.85
TraesCS4B01G050500.1	Wheat	plastid	52.24	54.28
TraesCS4D01G050700.1	Wheat	plastid	52.24	54.15
TraesCS4A01G264500.1	Wheat	plastid	52.47	54.0
VIT_15s0024g00690.t01	Wine grape	plastid	49.88	51.58
Os03t0717900-01	Rice	cytosol	53.88	50.33
CDY29940	Canola	plastid	38.59	40.9
CDY35549	Canola	plastid	37.88	40.05
CDX86293	Canola	plastid	27.06	33.82
CDX85350	Canola	plastid	26.12	32.65
CDY34905	Canola	plastid	25.88	32.16
CDY28064	Canola	plastid	27.76	31.98
CDY60823	Canola	plastid	25.88	31.25
CDY24630	Canola	plastid	27.06	30.67

Protein Annotations

EnsemblPlants:CDY58279	EnsemblPlantsGene:GSBRNA2T00023344001	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF4
PFAM:PF05542	ProteinID:CDY58279	ProteinID:CDY58279.1	SEG:seg	UniParc:UPI0004EEAD2D	UniProt:A0A078IZZ1
MapMan:35.1	:	:	:	:	:

Description

BnaCnng32840DBnaCnng32840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZZ1]

Coordinates

chrLK033652:+:45989..47776

Molecular Weight (calculated)

47160.7 Da

IEP (calculated)

7.140

GRAVY (calculated)

-0.380

Length

425 amino acids

Sequence
(BLAST)

001: MVAMAASFAQ SPSFLRRNSR NASGSILLTA SSPGSIRFSS GPQFRHRHSS CLKLSRPSQS RTTSLKSRRS FVVKSSASGD ASDSIAPLQL KSPVGQFLSQ
101: ILVSHPHLVP AAIEQQLEQL QTDREAEEHI KDSFSSLPGT DIVLYRRIAE VKEKERRKAL EEILYALVVQ KFMDANVSLV PSITSSSTDP SGRVDTWPTQ
201: DGELEQLHSP EVYEMIQNHL SIILKNREGD LSTVAQISKL GIGQVYAASV MYGYFLKRID QRFQLEKTMK ILPGGSDEGE TSIEQAGRET QRSFYEEAEE
301: TYQAVSSNQE VGSFVGGINA SGGSSSETKQ SRLKTYVMSF DGETLQRYAT IRSREAVGII EKHTEALFGR PEIVITPQGI DSSKDEHIKI SFKGLKRLVL
401: EAVTFGSFLW DVESHVDSRY HFVLN

Best Arabidopsis Sequence Match ( AT1G48450.1 )
(BLAST)

001: MDAVAANLFQ SPSLLRQTSE RLIFSTPNCP GFMRISSGPQ FRLRQNSSLK FSRPFQSGTT CVKSRRSFVV KASASGDAST ESIAPLQLKS PVGQFLSQIL
101: VSHPHLVPAA VEQQLEQLQI DRDAEEQSKD ASSVLGTDIV LYRRIAEVKE KERRRALEEI LYALVVQKFM DANVTLVPSI TSSSADPSGR VDTWPTLDGE
201: LERLHSPEVY EMIQNHLSII LKNRTDDLTA VAQISKLGVG QVYAASVMYG YFLKRIDQRF QLEKTMRILP GGSDEGETSI EQAGRDVERN FYEEAEETYQ
301: AVSSNQDVGS FVGGINASGG FSSDMKQSRL KTYVMSFDGE TLQRYATIRS RESVGIIEKH TEALFGRPEI VITPQGTIDS SKDEHIKISF KGLKRLVLEA
401: VTFGSFLWDV ESHVDSRYHF VLN

Arabidopsis Description

Alanine-tRNA ligase, putative (DUF760) [Source:UniProtKB/TrEMBL;Acc:Q9LP80]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.