Factsheet for VIT_15s0024g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g08760.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48450.1	VIT_08s0007g08760.t01	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0119g00070.t01	Wine grape	plastid	68.13	66.83
Solyc03g098000.2.1	Tomato	plastid	53.28	56.74
KRH48705	Soybean	plastid	54.74	55.15
KRH39016	Soybean	plastid	55.23	54.83
KRH60570	Soybean	plastid	52.31	53.75
Bra001683.1-P	Field mustard	plastid	52.8	53.19
CDX82345	Canola	plastid	52.31	52.96
KRH41876	Soybean	plastid	51.82	52.72
CDX92162	Canola	plastid	53.04	52.53
CDX95820	Canola	plastid	53.04	52.53
PGSC0003DMT400083980	Potato	plastid	53.77	52.49
AT3G17800.2	Thale cress	plastid	54.5	52.46
CDX75937	Canola	plastid	52.8	52.42
Bra022245.1-P	Field mustard	plastid	52.8	52.29
GSMUA_Achr1P22120_001	Banana	plastid	48.42	51.82
GSMUA_Achr8P30820_001	Banana	mitochondrion	51.34	50.72
CDY23684	Canola	plastid	50.12	50.61
Bra032255.1-P	Field mustard	plastid	50.12	50.61
CDY58279	Canola	plastid	51.58	49.88
AT1G48450.1	Thale cress	plastid	51.34	49.88
HORVU4Hr1G008300.1	Barley	plastid	46.96	47.3
TraesCS4B01G050500.1	Wheat	plastid	46.72	46.94
TraesCS4D01G050700.1	Wheat	plastid	46.47	46.59
KXG37708	Sorghum	plastid	46.96	46.51
TraesCS4A01G264500.1	Wheat	plastid	46.72	46.49
Zm00001d013411_P002	Maize	plastid	45.99	45.43
Zm00001d033787_P001	Maize	plastid	46.72	45.39
CDY19857	Canola	nucleus	10.95	43.27
VIT_02s0012g02240.t01	Wine grape	plastid	41.61	42.43
Os03t0717900-01	Rice	cytosol	46.72	42.2
VIT_00s2037g00010.t01	Wine grape	cytosol	10.22	39.25
VIT_00s0360g00020.t01	Wine grape	mitochondrion	19.22	32.24

Protein Annotations

ArrayExpress:VIT_15s0024g00690	EMBL:AM465611	EMBL:FN596748	EnsemblPlants:VIT_15s0024g00690.t01	EnsemblPlantsGene:VIT_15s0024g00690	EntrezGene:100245443
EntrezGene:LOC100245443	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF4	PFAM:PF05542
ProteinID:CAN79123	ProteinID:CAN79123.1	ProteinID:CCB62183	ProteinID:CCB62183.1	RefSeq:XP_002273280	RefSeq:XP_002273280.1
UniParc:UPI0001983875	UniProt:F6I5G5	wikigene:100245443	wikigene:LOC100245443	MapMan:35.1	:

Description

No Description!

Coordinates

chr15:+:1165904..1167825

Molecular Weight (calculated)

45685.8 Da

IEP (calculated)

7.858

GRAVY (calculated)

-0.186

Length

411 amino acids

Sequence
(BLAST)

001: MEAAIATVVP SSLGFSRATN FRSRSTVFNV NGYLNLKSHS RPGHRKMASG WKEQTMVRAS ATVDNDSYES AAPIAPLRLE SPIGRFLTEI LISHPHLVPA
101: AVERQLEQFQ TDRDAEGHKQ ESSASGIELL LYRRIAKVKA NERKKALEEI LYVLVVQKFV GANVPLIPRM SPSSLGSSGR VDNWPSLDRD LGELHSPEAT
201: EMIQNHLAFI LGNRFGDSTS VAKMSKLRVG QVYAASVMYG YFLKRVDERF QLEKTMKILP YALDGDKGYV EEAMGMSPFG SDDSVQGVES QPEASCWAGG
301: LTIGSFGHWK KPSSLGSYVK LIDAETLMRY TTIRSMEAVS IIQKHTQALF GRRDVAIIPN IPMWTLDSSE DELIKMSFGG LKRLVLEALT FGSFLWDVES
401: FVDSRLHFVV N

Best Arabidopsis Sequence Match ( AT3G17800.1 )
(BLAST)

001: MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRQN ASARSSRSLQ SLTTTAKTRR SFVVRASSAS NDASSGSSPK PIAPLQLQSP
101: AGQFLSQILV SHPHLVPAAV EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME ANVSLVPSVS PSSDPSGRVD
201: TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
301: VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT
401: FGSFLWDVES HVDARYHFVL N

Arabidopsis Description

Protein of unknown function (DUF760) [Source:TAIR;Acc:AT3G17800]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.