CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH33290
KRH72015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48450.1	KRH33290	AT2G41680.1	21798944
AT1G48450.1	KRH72015	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60570	Soybean	plastid	87.62	88.5
KRH48705	Soybean	plastid	66.58	65.93
KRH39016	Soybean	plastid	66.83	65.22
Solyc03g098000.2.1	Tomato	plastid	59.9	62.69
VIT_17s0119g00070.t01	Wine grape	plastid	64.11	61.81
GSMUA_Achr1P22120_001	Banana	plastid	58.42	61.46
CDX82345	Canola	plastid	60.64	60.34
PGSC0003DMT400083980	Potato	plastid	62.38	59.86
Bra001683.1-P	Field mustard	plastid	60.15	59.56
CDX75937	Canola	plastid	60.64	59.18
CDY19857	Canola	nucleus	15.1	58.65
CDX95820	Canola	plastid	60.15	58.55
CDX92162	Canola	plastid	59.41	57.83
CDY23684	Canola	plastid	58.17	57.74
Bra032255.1-P	Field mustard	plastid	58.17	57.74
Bra022245.1-P	Field mustard	plastid	59.16	57.59
AT3G17800.2	Thale cress	plastid	60.4	57.14
GSMUA_Achr8P30820_001	Banana	mitochondrion	58.42	56.73
CDY58279	Canola	plastid	58.17	55.29
KXG37708	Sorghum	plastid	56.44	54.94
HORVU4Hr1G008300.1	Barley	plastid	55.45	54.9
AT1G48450.1	Thale cress	plastid	57.18	54.61
TraesCS4B01G050500.1	Wheat	plastid	55.2	54.52
TraesCS4D01G050700.1	Wheat	plastid	55.2	54.39
TraesCS4A01G264500.1	Wheat	plastid	54.7	53.51
Zm00001d013411_P002	Maize	plastid	54.95	53.37
Zm00001d033787_P001	Maize	plastid	55.69	53.19
VIT_15s0024g00690.t01	Wine grape	plastid	52.72	51.82
Os03t0717900-01	Rice	cytosol	55.94	49.67
KRH74317	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.56	43.35
KRH39607	Soybean	golgi	42.82	42.4
KRH07429	Soybean	plastid	27.48	28.61
KRG99623	Soybean	plastid	25.74	27.96
KRH66142	Soybean	plastid	26.98	27.74
KRH46625	Soybean	plastid	25.74	27.44

Protein Annotations

EMBL:ACUP02004781	EnsemblPlants:KRH41876	EnsemblPlantsGene:GLYMA_08G056200	EntrezGene:100793300	InterPro:At3g17800-like	InterPro:DUF760
PANTHER:PTHR31808	PANTHER:PTHR31808:SF4	PFAM:PF05542	ProteinID:KRH41876	ProteinID:KRH41876.1	SEG:seg
UniParc:UPI000233825E	UniProt:I1KQM6	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:4320935..4323245

Molecular Weight (calculated)

45326.9 Da

IEP (calculated)

8.408

GRAVY (calculated)

-0.366

Length

404 amino acids

Sequence
(BLAST)

001: MDVAVTAFRS PLIILRRPVN ESASARFGST FGFSRKQRFS SVCIPKHKHK QGRRRGFVVR ASASSSPESD DAKIAPLQFE SSIGQFLSQI LKDHPHLVPA
101: AVDQQLQQLQ TDRDAHQQNE QPSASTTDLV LYRRIAEVKA NERRKALEEI LYALVVQKFM DANISLIPSV TPDLSGKVDL WPNEDGKLEL LHSHEAYEMI
201: QNHLALILGN RAGDLTSIAE ISKFRVGQVY AASVMYGYFL RRVDQRFQLE KTMKVLPNAT EKENSAHQTT MDNARPSIEE DTSQVMSHPE VSTWPGGDVR
301: PGGFGYGVKA TRLRNYVMSF DGDTLQRYAT IRSKEAVSII EKHTEALFGR PEIVVTPEGA VSKDENIKIS FGGLKKLVLE AVTFGSFLWD VESYVDSRYH
401: FVLN

Best Arabidopsis Sequence Match ( AT1G32160.1 )
(BLAST)

001: MQAIGSSHGR RLCFNHYLSD SFSKFLSPSS SPSLLPQRCH SFCIPKLGSS STNENGRGRS VTVRASGDED SNENFAPLAP VELESPVGQL LEQILRTHPH
101: LLPVTVDEQL EKFAAESESR KADSSSTQDI LQKRISEVRD KERRKTLAEI IYCLVVHRFV EKGISMIPRI KPTSDPAGRI DLWPNQEEKL EVIHSADAFE
201: MIQSHLSSVL GDGPAVGPLS SIVQIGKIKL GKLYAASAMY GYFLRRVDQR YQLERTMNTL PKRPEKTRER FEEPSPPYPL WDPDSLIRIQ PEEYDPDEYA
301: IQRNEDESSS YGLRSYVTYL DSDTLQRYAT IRSKEAMTLI EKQTQALFGR PDIRILEDGK LDTSNDEVLS LSVSGLAMLV LEAVAFGSFL WDSESYVESK
401: YHFLKA

Arabidopsis Description

At1g32160/F3C3_6 [Source:UniProtKB/TrEMBL;Acc:Q9FVR1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.